miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 17547 0.86 0.053325
Target:  5'- gGGCGGCGCGGgcccGCCGU--UCGGCGGu -3'
miRNA:   3'- -CCGCCGCGCCaa--CGGCAugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 47711 0.84 0.0766
Target:  5'- cGGCGGCGuCGGggGCCuc-CUCGGCGGa -3'
miRNA:   3'- -CCGCCGC-GCCaaCGGcauGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28783 0.78 0.166914
Target:  5'- cGCGGCGCGGgcGCuCGcgGCcgCGGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCG-GCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 93733 0.77 0.197661
Target:  5'- cGGCGGCaGCGcgcGCuuCGUACUCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCcaaCG--GCAUGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 135450 0.77 0.207313
Target:  5'- aGGCGGCGCGGgcGCugcgggaccuCGUACUgcgCGGCGa -3'
miRNA:   3'- -CCGCCGCGCCaaCG----------GCAUGA---GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 121773 0.76 0.222552
Target:  5'- cGCGGUGgGGUgGCCGcgGC-CGGCGGg -3'
miRNA:   3'- cCGCCGCgCCAaCGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 29971 0.76 0.22784
Target:  5'- aGGCGGCGCGGUgcgccGCCGgcgcguccgGCagCGGCGc -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCa--------UGa-GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 39797 0.76 0.22784
Target:  5'- gGGCGGCGCGGccGCCGgcgccagGCUCuGGCc- -3'
miRNA:   3'- -CCGCCGCGCCaaCGGCa------UGAG-CCGcc -5'
23744 5' -60.3 NC_005261.1 + 74818 0.76 0.244343
Target:  5'- uGGCGGagGUGGccGCCGUGCUC-GCGGa -3'
miRNA:   3'- -CCGCCg-CGCCaaCGGCAUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 25284 0.76 0.250061
Target:  5'- aGGgGGCGCGGUcugugGCCGUGagcgucgUCGGgGGg -3'
miRNA:   3'- -CCgCCGCGCCAa----CGGCAUg------AGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 67065 0.75 0.255888
Target:  5'- gGGCGcGCGCGGggGCUc-GCUCgGGCGGu -3'
miRNA:   3'- -CCGC-CGCGCCaaCGGcaUGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 2555 0.75 0.255888
Target:  5'- cGGCgcugGGCGCGGgcgUGUgGUACUCcccgGGCGGc -3'
miRNA:   3'- -CCG----CCGCGCCa--ACGgCAUGAG----CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98453 0.75 0.260033
Target:  5'- aGGCGGCGCccgcaaaauccgacGGgcgGCCGUccuccgcggGCUCGGgCGGg -3'
miRNA:   3'- -CCGCCGCG--------------CCaa-CGGCA---------UGAGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 81296 0.75 0.261827
Target:  5'- cGCGGCGCGcacguccgUGCCGUugUCGG-GGu -3'
miRNA:   3'- cCGCCGCGCca------ACGGCAugAGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 137980 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 137944 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 297 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 261 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 127495 0.75 0.267877
Target:  5'- uGGCGGCuGCc--UGCCGggcgUACUCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGccaACGGC----AUGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31469 0.75 0.27404
Target:  5'- cGGCGGCcugaGUGGccGCCgGUGCgCGGCGGg -3'
miRNA:   3'- -CCGCCG----CGCCaaCGG-CAUGaGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.