miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23749 3' -54.7 NC_005261.1 + 77774 0.66 0.931394
Target:  5'- gGCGGGGAcGacgaggccuacUACCCC-GGcGAGGGCGCg -3'
miRNA:   3'- gCGCUCUU-C-----------AUGGGGaCC-UUCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 12727 0.66 0.926057
Target:  5'- gCGCGGGcccgccGgcCCCCUGGgcGGGCcCg -3'
miRNA:   3'- -GCGCUCuu----CauGGGGACCuuCUCGuG- -5'
23749 3' -54.7 NC_005261.1 + 97642 0.66 0.926057
Target:  5'- aGCGGGcgcGGGUGCCgcaCCUGGggGgccGGCGu -3'
miRNA:   3'- gCGCUC---UUCAUGG---GGACCuuC---UCGUg -5'
23749 3' -54.7 NC_005261.1 + 47600 0.66 0.92047
Target:  5'- gCGCGAgGGAGccgcCCCCUGcGGGGGCGg -3'
miRNA:   3'- -GCGCU-CUUCau--GGGGACcUUCUCGUg -5'
23749 3' -54.7 NC_005261.1 + 25311 0.66 0.92047
Target:  5'- uCGuCGGGggGUucgaaucccaGCCCCggcuUGGggGGGCc- -3'
miRNA:   3'- -GC-GCUCuuCA----------UGGGG----ACCuuCUCGug -5'
23749 3' -54.7 NC_005261.1 + 99420 0.66 0.92047
Target:  5'- aGCGuGAAcGUcacgcugcuCCCCgucgggcGGAAGAGCGCg -3'
miRNA:   3'- gCGCuCUU-CAu--------GGGGa------CCUUCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 109290 0.66 0.919898
Target:  5'- aCGCGAGGAGgaACuuagagauagccgCCCUGGccuccgcGAGCGCg -3'
miRNA:   3'- -GCGCUCUUCa-UG-------------GGGACCuu-----CUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 111778 0.66 0.914635
Target:  5'- gCGCGcccGGGGuGUGCCCCUGGAcgccuGGcuCGCg -3'
miRNA:   3'- -GCGC---UCUU-CAUGGGGACCU-----UCucGUG- -5'
23749 3' -54.7 NC_005261.1 + 117784 0.66 0.911016
Target:  5'- gGCGGGGAGgagggaggcgaagcuCCCCUGGGugaaaccaauaaagAGAGC-Cg -3'
miRNA:   3'- gCGCUCUUCau-------------GGGGACCU--------------UCUCGuG- -5'
23749 3' -54.7 NC_005261.1 + 74422 0.66 0.908554
Target:  5'- gGCGGGAGGg--CCgaGGA-GAGCGCc -3'
miRNA:   3'- gCGCUCUUCaugGGgaCCUuCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 49799 0.66 0.908554
Target:  5'- gCGCGAGAcGUcGCCCUccGcGGGGCGCg -3'
miRNA:   3'- -GCGCUCUuCA-UGGGGacCuUCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 97482 0.66 0.908554
Target:  5'- cCGuCGGGggG-GCCCUUGG--GGGCGCc -3'
miRNA:   3'- -GC-GCUCuuCaUGGGGACCuuCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 24032 0.67 0.902228
Target:  5'- gCGCGGGGuucgGGUGggcgUCCUUGGguGGGCGCc -3'
miRNA:   3'- -GCGCUCU----UCAU----GGGGACCuuCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 30426 0.67 0.895659
Target:  5'- cCGCGGGcGGa---CCUGGAGGAGgACg -3'
miRNA:   3'- -GCGCUCuUCauggGGACCUUCUCgUG- -5'
23749 3' -54.7 NC_005261.1 + 113017 0.67 0.895659
Target:  5'- gGCGGGcAGUACCCCac--AGAGCGg -3'
miRNA:   3'- gCGCUCuUCAUGGGGaccuUCUCGUg -5'
23749 3' -54.7 NC_005261.1 + 41414 0.67 0.895659
Target:  5'- gCGCGccacGAcgAGU-CCCUUGGccGAGCACa -3'
miRNA:   3'- -GCGCu---CU--UCAuGGGGACCuuCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 97972 0.67 0.895659
Target:  5'- gGCgGAGcGGUGCCCg-GGGAGAGUg- -3'
miRNA:   3'- gCG-CUCuUCAUGGGgaCCUUCUCGug -5'
23749 3' -54.7 NC_005261.1 + 75828 0.67 0.888852
Target:  5'- gCGCG-GccGcGCCCggGGAGGGGCGCg -3'
miRNA:   3'- -GCGCuCuuCaUGGGgaCCUUCUCGUG- -5'
23749 3' -54.7 NC_005261.1 + 134366 0.67 0.888158
Target:  5'- gCGCGGGggGcggcGCCgCUGGcgacggcGAGAGCGg -3'
miRNA:   3'- -GCGCUCuuCa---UGGgGACC-------UUCUCGUg -5'
23749 3' -54.7 NC_005261.1 + 120943 0.67 0.887462
Target:  5'- gCGCGGGAAGguggaggcucgcGCCCCgc--GGGGCGCg -3'
miRNA:   3'- -GCGCUCUUCa-----------UGGGGaccuUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.