miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 28818 0.66 0.910334
Target:  5'- cCGCCGC-CGaagccgAGGCGgccgcgGcUGAGGCGg -3'
miRNA:   3'- -GCGGCGcGCa-----UCCGCaa----CuACUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 30180 0.71 0.675048
Target:  5'- gCGCUGCGCGccgAGGCGgccgccgcgcugGAGGCGg -3'
miRNA:   3'- -GCGGCGCGCa--UCCGCaacua-------CUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 30382 0.71 0.678111
Target:  5'- gCGCCGCgGCGcGGGUGgaGGUGGAGg- -3'
miRNA:   3'- -GCGGCG-CGCaUCCGCaaCUACUUCgc -5'
23753 3' -55.6 NC_005261.1 + 31306 0.67 0.877176
Target:  5'- cCGCCGCGCG-GGGCcc-GcgGgcGCGc -3'
miRNA:   3'- -GCGGCGCGCaUCCGcaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 31343 0.68 0.804158
Target:  5'- gCGCCGCuGCGgcGGCGcguggccugGAUGucGCa -3'
miRNA:   3'- -GCGGCG-CGCauCCGCaa-------CUACuuCGc -5'
23753 3' -55.6 NC_005261.1 + 31683 0.66 0.916261
Target:  5'- cCGCgGCGCGgcGGCGgcugaucgUGAUcGAcGCc -3'
miRNA:   3'- -GCGgCGCGCauCCGCa-------ACUA-CUuCGc -5'
23753 3' -55.6 NC_005261.1 + 32386 0.72 0.626803
Target:  5'- gCGCgGCGCGgcGGCGUccc-GGAGCGc -3'
miRNA:   3'- -GCGgCGCGCauCCGCAacuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 32913 0.74 0.505739
Target:  5'- gGgCGCGCGUggggggcggcGGGCGggGggGggGCGg -3'
miRNA:   3'- gCgGCGCGCA----------UCCGCaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 33606 0.69 0.767279
Target:  5'- gCGCCgGCGCGggcGGCGggGcccgGggGCGc -3'
miRNA:   3'- -GCGG-CGCGCau-CCGCaaCua--CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 35058 0.66 0.907896
Target:  5'- gGCCGCGCGgcGGCGgucucc--GCGc -3'
miRNA:   3'- gCGGCGCGCauCCGCaacuacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 37009 0.71 0.657641
Target:  5'- gGCUGCGCG-GGGCcaguUUGcgGggGCGg -3'
miRNA:   3'- gCGGCGCGCaUCCGc---AACuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 38483 0.67 0.869864
Target:  5'- aGCaCGgcCGCGgcGGCGUcGAcUGGAGCGu -3'
miRNA:   3'- gCG-GC--GCGCauCCGCAaCU-ACUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 43094 0.67 0.884266
Target:  5'- aCGCCGCGCGcuacgAGGaCGUggcgcggGAUuGgcGCGc -3'
miRNA:   3'- -GCGGCGCGCa----UCC-GCAa------CUA-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 43639 0.66 0.897767
Target:  5'- gCGCC-CGUGUGGcGCGgcGGUGAcGUGc -3'
miRNA:   3'- -GCGGcGCGCAUC-CGCaaCUACUuCGC- -5'
23753 3' -55.6 NC_005261.1 + 43782 0.69 0.776704
Target:  5'- gCGgCGCGCGgaGGGCGccgcgGGUGAGGgGg -3'
miRNA:   3'- -GCgGCGCGCa-UCCGCaa---CUACUUCgC- -5'
23753 3' -55.6 NC_005261.1 + 44036 0.68 0.804158
Target:  5'- cCGCCGCGCGgcGGCcgcggGcgGGcAGCa -3'
miRNA:   3'- -GCGGCGCGCauCCGcaa--CuaCU-UCGc -5'
23753 3' -55.6 NC_005261.1 + 45938 0.66 0.890455
Target:  5'- cCGCCGCGCGcgAGGgccgccagggcgcCGUUGAgcauGCGc -3'
miRNA:   3'- -GCGGCGCGCa-UCC-------------GCAACUacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 47702 0.7 0.707502
Target:  5'- gCGCCGCGuCGgcGGCGUcGggGGccuccucGGCGg -3'
miRNA:   3'- -GCGGCGC-GCauCCGCAaCuaCU-------UCGC- -5'
23753 3' -55.6 NC_005261.1 + 49249 0.66 0.916261
Target:  5'- cCGCCGcCGCGgcGGCGUc---GgcGCGc -3'
miRNA:   3'- -GCGGC-GCGCauCCGCAacuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 50997 0.8 0.244266
Target:  5'- gGCgGCGCGUGGGCGcgGcgGGAGCu -3'
miRNA:   3'- gCGgCGCGCAUCCGCaaCuaCUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.