miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 72 0.71 0.647371
Target:  5'- gGCgCGCGCGgGGGCGggGugcGggGCGc -3'
miRNA:   3'- gCG-GCGCGCaUCCGCaaCua-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 353 0.68 0.813006
Target:  5'- aGCCcgGCGCGgcccGGCGgcGGUGGcGGCGg -3'
miRNA:   3'- gCGG--CGCGCau--CCGCaaCUACU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 460 0.7 0.71852
Target:  5'- gGCCGCGaCGgccGGCGg-GAUGgcGCGg -3'
miRNA:   3'- gCGGCGC-GCau-CCGCaaCUACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 981 0.74 0.476904
Target:  5'- gGCCGCGCGcAGaGCGgagGAgacgGggGCGg -3'
miRNA:   3'- gCGGCGCGCaUC-CGCaa-CUa---CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 1401 0.69 0.748074
Target:  5'- gCGCCGCggccGCGgcGGCGgcg--GggGCGg -3'
miRNA:   3'- -GCGGCG----CGCauCCGCaacuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 1823 0.66 0.897767
Target:  5'- aGCCGCGCGUAaGCGgccucGgcGCGc -3'
miRNA:   3'- gCGGCGCGCAUcCGCaacuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 3827 0.66 0.910334
Target:  5'- uGCCGCGgGcccGGGCGcUGgcGGcAGCGg -3'
miRNA:   3'- gCGGCGCgCa--UCCGCaACuaCU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 8805 0.67 0.884266
Target:  5'- aGCCGC-CGaGGGC-UUGAaGggGCGc -3'
miRNA:   3'- gCGGCGcGCaUCCGcAACUaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 11072 0.66 0.891131
Target:  5'- cCGCCaGCGCGUcuaGGGaCGg-GAcGggGCGg -3'
miRNA:   3'- -GCGG-CGCGCA---UCC-GCaaCUaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 11470 0.67 0.84666
Target:  5'- aGCgGgCGCGgagGGGCGggGcgGggGUGc -3'
miRNA:   3'- gCGgC-GCGCa--UCCGCaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 13666 0.71 0.637089
Target:  5'- cCGCCGCGgGggGGGCGcgGGgcgcgcgggcgUGggGCGg -3'
miRNA:   3'- -GCGGCGCgCa-UCCGCaaCU-----------ACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 14170 0.66 0.910334
Target:  5'- aCGgCGCGCGUcucgGGGCGcgGGUcAGGCc -3'
miRNA:   3'- -GCgGCGCGCA----UCCGCaaCUAcUUCGc -5'
23753 3' -55.6 NC_005261.1 + 14667 0.74 0.496041
Target:  5'- uGCCGCGCGc-GGCGUuuauucuucgcUGAUGGuGGCGa -3'
miRNA:   3'- gCGGCGCGCauCCGCA-----------ACUACU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 15150 0.66 0.897767
Target:  5'- cCGCCGUccgcgguggGgGUGGGCGUaGcgGcGGCGg -3'
miRNA:   3'- -GCGGCG---------CgCAUCCGCAaCuaCuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 15434 0.67 0.862337
Target:  5'- gGCCGgGCGcGGGCcGgcGAUGGAGa- -3'
miRNA:   3'- gCGGCgCGCaUCCG-CaaCUACUUCgc -5'
23753 3' -55.6 NC_005261.1 + 16177 0.68 0.804158
Target:  5'- gGCgCGgGCGU-GGCGggGGUG-GGCGg -3'
miRNA:   3'- gCG-GCgCGCAuCCGCaaCUACuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 19931 0.73 0.525371
Target:  5'- uCGCCcucGCuaGCGUccuGGGCGggGGUGggGCGg -3'
miRNA:   3'- -GCGG---CG--CGCA---UCCGCaaCUACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 20246 0.67 0.85224
Target:  5'- cCGCCGCGCGcuccaUGGGCGccGAgaaccgccgggucgUGucGCGg -3'
miRNA:   3'- -GCGGCGCGC-----AUCCGCaaCU--------------ACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 22090 0.71 0.678111
Target:  5'- gCGCCGCGUGgGGGCGggagggcGGUGu-GCGg -3'
miRNA:   3'- -GCGGCGCGCaUCCGCaa-----CUACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 23733 0.69 0.757733
Target:  5'- gGCCGCGCcgAGGCGcguccgGGaGggGCGg -3'
miRNA:   3'- gCGGCGCGcaUCCGCaa----CUaCuuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.