miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 69225 0.66 0.921948
Target:  5'- aGCUGUGCGcgcugGGGCGguucGccGAGGCGc -3'
miRNA:   3'- gCGGCGCGCa----UCCGCaa--CuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 60702 0.71 0.637089
Target:  5'- aCGCCGCGCGU-GGCGgcGcac-GGCGg -3'
miRNA:   3'- -GCGGCGCGCAuCCGCaaCuacuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 86935 0.71 0.637089
Target:  5'- cCGCCGCGCGc-GGCGggcUGGucaaagaccgUGAAGCa -3'
miRNA:   3'- -GCGGCGCGCauCCGCa--ACU----------ACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 72 0.71 0.647371
Target:  5'- gGCgCGCGCGgGGGCGggGugcGggGCGc -3'
miRNA:   3'- gCG-GCGCGCaUCCGCaaCua-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 62822 0.71 0.647371
Target:  5'- uCGCCGCGCGgggcaccGGCGggGGacUGgcGCGc -3'
miRNA:   3'- -GCGGCGCGCau-----CCGCaaCU--ACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 137755 0.71 0.647371
Target:  5'- gGCgCGCGCGgGGGCGggGugcGggGCGc -3'
miRNA:   3'- gCG-GCGCGCaUCCGCaaCua-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 37009 0.71 0.657641
Target:  5'- gGCUGCGCG-GGGCcaguUUGcgGggGCGg -3'
miRNA:   3'- gCGGCGCGCaUCCGc---AACuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 30180 0.71 0.675048
Target:  5'- gCGCUGCGCGccgAGGCGgccgccgcgcugGAGGCGg -3'
miRNA:   3'- -GCGGCGCGCa--UCCGCaacua-------CUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 62891 0.71 0.678111
Target:  5'- aGcCCGCGCG-AGGCGggGc-GggGCGg -3'
miRNA:   3'- gC-GGCGCGCaUCCGCaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 13666 0.71 0.637089
Target:  5'- cCGCCGCGgGggGGGCGcgGGgcgcgcgggcgUGggGCGg -3'
miRNA:   3'- -GCGGCGCgCa-UCCGCaaCU-----------ACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 32386 0.72 0.626803
Target:  5'- gCGCgGCGCGgcGGCGUccc-GGAGCGc -3'
miRNA:   3'- -GCGgCGCGCauCCGCAacuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 60248 0.72 0.616521
Target:  5'- cCGCCGCgGCGggagcGGCGgccgUGAaGAGGCGc -3'
miRNA:   3'- -GCGGCG-CGCau---CCGCa---ACUaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 73080 0.77 0.362695
Target:  5'- uCGCCaggaGCGCGUAGGCGUUGcgcacGGCGg -3'
miRNA:   3'- -GCGG----CGCGCAUCCGCAACuacu-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 981 0.74 0.476904
Target:  5'- gGCCGCGCGcAGaGCGgagGAgacgGggGCGg -3'
miRNA:   3'- gCGGCGCGCaUC-CGCaa-CUa---CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 14667 0.74 0.496041
Target:  5'- uGCCGCGCGc-GGCGUuuauucuucgcUGAUGGuGGCGa -3'
miRNA:   3'- gCGGCGCGCauCCGCA-----------ACUACU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 32913 0.74 0.505739
Target:  5'- gGgCGCGCGUggggggcggcGGGCGggGggGggGCGg -3'
miRNA:   3'- gCgGCGCGCA----------UCCGCaaCuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 19931 0.73 0.525371
Target:  5'- uCGCCcucGCuaGCGUccuGGGCGggGGUGggGCGg -3'
miRNA:   3'- -GCGG---CG--CGCA---UCCGCaaCUACuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 137115 0.73 0.545285
Target:  5'- -cCCGCGCGgcGGCGUUuugugGAaGGAGCGa -3'
miRNA:   3'- gcGGCGCGCauCCGCAA-----CUaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 134361 0.73 0.555334
Target:  5'- cCGCCGCGCGggGGGCGgcgccgcUGgcGAcGGCGa -3'
miRNA:   3'- -GCGGCGCGCa-UCCGCa------ACuaCU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 98346 0.72 0.606251
Target:  5'- uGUCGaCGCGgGGGCGggGGUGGGcGCGg -3'
miRNA:   3'- gCGGC-GCGCaUCCGCaaCUACUU-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.