miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 3' -55.6 NC_005261.1 + 3827 0.66 0.910334
Target:  5'- uGCCGCGgGcccGGGCGcUGgcGGcAGCGg -3'
miRNA:   3'- gCGGCGCgCa--UCCGCaACuaCU-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 28818 0.66 0.910334
Target:  5'- cCGCCGC-CGaagccgAGGCGgccgcgGcUGAGGCGg -3'
miRNA:   3'- -GCGGCGcGCa-----UCCGCaa----CuACUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 69225 0.66 0.921948
Target:  5'- aGCUGUGCGcgcugGGGCGguucGccGAGGCGc -3'
miRNA:   3'- gCGGCGCGCa----UCCGCaa--CuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 59493 0.66 0.902273
Target:  5'- cCGCCGCGCcagcGGCGgcGGucgcacgcgcgcccUGGAGCa -3'
miRNA:   3'- -GCGGCGCGcau-CCGCaaCU--------------ACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 117261 0.66 0.891131
Target:  5'- uCGCCGCGCGccucgAGGaCGgcGAgccuGGCGc -3'
miRNA:   3'- -GCGGCGCGCa----UCC-GCaaCUacu-UCGC- -5'
23753 3' -55.6 NC_005261.1 + 80053 0.66 0.891131
Target:  5'- uCGCCacuggcggcggGCGCGggGGGCGUgGggGAcGCGg -3'
miRNA:   3'- -GCGG-----------CGCGCa-UCCGCAaCuaCUuCGC- -5'
23753 3' -55.6 NC_005261.1 + 11072 0.66 0.891131
Target:  5'- cCGCCaGCGCGUcuaGGGaCGg-GAcGggGCGg -3'
miRNA:   3'- -GCGG-CGCGCA---UCC-GCaaCUaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 15150 0.66 0.897767
Target:  5'- cCGCCGUccgcgguggGgGUGGGCGUaGcgGcGGCGg -3'
miRNA:   3'- -GCGGCG---------CgCAUCCGCAaCuaCuUCGC- -5'
23753 3' -55.6 NC_005261.1 + 104994 0.66 0.897767
Target:  5'- gCGCCcaGCGCG--GGCGgcGGUcGggGCGc -3'
miRNA:   3'- -GCGG--CGCGCauCCGCaaCUA-CuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 102945 0.66 0.891131
Target:  5'- cCGCCGCuGCGgcGGCGgccGcgGgcGCc -3'
miRNA:   3'- -GCGGCG-CGCauCCGCaa-CuaCuuCGc -5'
23753 3' -55.6 NC_005261.1 + 1823 0.66 0.897767
Target:  5'- aGCCGCGCGUAaGCGgccucGgcGCGc -3'
miRNA:   3'- gCGGCGCGCAUcCGCaacuaCuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 123169 0.66 0.904168
Target:  5'- gGCgGgCGCGcGGGCGUgguggcUGGUGuGGGCGg -3'
miRNA:   3'- gCGgC-GCGCaUCCGCA------ACUAC-UUCGC- -5'
23753 3' -55.6 NC_005261.1 + 76187 0.66 0.897767
Target:  5'- aGCgGgGCcUGGGCGUgcUGAUGcAGCa -3'
miRNA:   3'- gCGgCgCGcAUCCGCA--ACUACuUCGc -5'
23753 3' -55.6 NC_005261.1 + 127714 0.66 0.896458
Target:  5'- aGCUGCGCGUGGccugccugguaGCGggagcuuggcgGcgGGAGCGg -3'
miRNA:   3'- gCGGCGCGCAUC-----------CGCaa---------CuaCUUCGC- -5'
23753 3' -55.6 NC_005261.1 + 43639 0.66 0.897767
Target:  5'- gCGCC-CGUGUGGcGCGgcGGUGAcGUGc -3'
miRNA:   3'- -GCGGcGCGCAUC-CGCaaCUACUuCGC- -5'
23753 3' -55.6 NC_005261.1 + 35058 0.66 0.907896
Target:  5'- gGCCGCGCGgcGGCGgucucc--GCGc -3'
miRNA:   3'- gCGGCGCGCauCCGCaacuacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 45938 0.66 0.890455
Target:  5'- cCGCCGCGCGcgAGGgccgccagggcgcCGUUGAgcauGCGc -3'
miRNA:   3'- -GCGGCGCGCa-UCC-------------GCAACUacuuCGC- -5'
23753 3' -55.6 NC_005261.1 + 14170 0.66 0.910334
Target:  5'- aCGgCGCGCGUcucgGGGCGcgGGUcAGGCc -3'
miRNA:   3'- -GCgGCGCGCA----UCCGCaaCUAcUUCGc -5'
23753 3' -55.6 NC_005261.1 + 98160 0.66 0.891131
Target:  5'- gGCCGCG-GgcGGCGggugUGuccuUGGAGCc -3'
miRNA:   3'- gCGGCGCgCauCCGCa---ACu---ACUUCGc -5'
23753 3' -55.6 NC_005261.1 + 69306 0.66 0.910334
Target:  5'- gCGCCG-GUGgcGGCGggagcgggGGUGAcGGCGa -3'
miRNA:   3'- -GCGGCgCGCauCCGCaa------CUACU-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.