miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 3' -56 NC_005261.1 + 58224 0.78 0.299353
Target:  5'- cAGcgCgcccGcGGCGGCGGGGUCCUCGGCc -3'
miRNA:   3'- cUCuaGa---C-CUGCUGCUCCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 83910 0.74 0.49945
Target:  5'- cGGGcUCgGGAcCGACGGGGUCCgagcgcgCGGCc -3'
miRNA:   3'- -CUCuAGaCCU-GCUGCUCCAGGa------GCCG- -5'
23756 3' -56 NC_005261.1 + 43848 0.72 0.588602
Target:  5'- cGAGggCgaGGACGcggccGCGucGUCCUCGGCg -3'
miRNA:   3'- -CUCuaGa-CCUGC-----UGCucCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 90883 0.72 0.619105
Target:  5'- -cGcgCUGGGCGACGgcauggcgcggcAGGUC-UCGGCg -3'
miRNA:   3'- cuCuaGACCUGCUGC------------UCCAGgAGCCG- -5'
23756 3' -56 NC_005261.1 + 57846 0.71 0.629302
Target:  5'- cGGGcgC-GGGCGGCaAGG-CCUCGGCg -3'
miRNA:   3'- -CUCuaGaCCUGCUGcUCCaGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 39245 0.71 0.649695
Target:  5'- cGAGGUCUccGGCGaggucuccaGCGAGGUCUUCGGg -3'
miRNA:   3'- -CUCUAGAc-CUGC---------UGCUCCAGGAGCCg -5'
23756 3' -56 NC_005261.1 + 88738 0.71 0.677125
Target:  5'- uGAGGgccagCUGGugGACGccauGGuggcggcgcugcgcUCCUCGGCc -3'
miRNA:   3'- -CUCUa----GACCugCUGCu---CC--------------AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 77768 0.7 0.719198
Target:  5'- cGGGG-CggcggGGACGACGAGG-CCUacuacccCGGCg -3'
miRNA:   3'- -CUCUaGa----CCUGCUGCUCCaGGA-------GCCG- -5'
23756 3' -56 NC_005261.1 + 121454 0.69 0.759013
Target:  5'- uGGGGcCgucGAUGGCGAGcUCCUCGGCg -3'
miRNA:   3'- -CUCUaGac-CUGCUGCUCcAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 52439 0.69 0.768464
Target:  5'- --cGUCcaGGGCcACGAGGUCCcCGGCg -3'
miRNA:   3'- cucUAGa-CCUGcUGCUCCAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 24205 0.69 0.768464
Target:  5'- aGGAUCgu--CGGCGGGGUCCUgcaaaGGCa -3'
miRNA:   3'- cUCUAGaccuGCUGCUCCAGGAg----CCG- -5'
23756 3' -56 NC_005261.1 + 19121 0.69 0.777794
Target:  5'- -cGGUCggugGGGCuaGGCGGGaacUCCUCGGCg -3'
miRNA:   3'- cuCUAGa---CCUG--CUGCUCc--AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 19947 0.69 0.777794
Target:  5'- ----cCUGGGCGGgggUGGGGcggCCUCGGCu -3'
miRNA:   3'- cucuaGACCUGCU---GCUCCa--GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 60833 0.69 0.777794
Target:  5'- gGAGAUCaucgGcGGCGGCGAGGUCg-CGcGCc -3'
miRNA:   3'- -CUCUAGa---C-CUGCUGCUCCAGgaGC-CG- -5'
23756 3' -56 NC_005261.1 + 98975 0.68 0.796057
Target:  5'- cAGGUCccGGAgcACGucGUCCUCGGCa -3'
miRNA:   3'- cUCUAGa-CCUgcUGCucCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 39724 0.68 0.819767
Target:  5'- gGGGGUUUGGGgGGCG-GGUgccccagucgcggaUCUCGGCc -3'
miRNA:   3'- -CUCUAGACCUgCUGCuCCA--------------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 106861 0.68 0.822328
Target:  5'- ----cCUGGGgGGCGGGcGUCCgCGGCc -3'
miRNA:   3'- cucuaGACCUgCUGCUC-CAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 30473 0.68 0.822328
Target:  5'- cGGGGg--GGACGAgGAGGccggggCCUCGGa -3'
miRNA:   3'- -CUCUagaCCUGCUgCUCCa-----GGAGCCg -5'
23756 3' -56 NC_005261.1 + 5496 0.68 0.829918
Target:  5'- gGGGGguagCUGGggccgcggcagcgGCGGCGAGGccgccggCUUCGGCg -3'
miRNA:   3'- -CUCUa---GACC-------------UGCUGCUCCa------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 63385 0.68 0.830752
Target:  5'- cGGGUCgcccuggccgUGGuCGAacaUGAGGUCgUCGGCg -3'
miRNA:   3'- cUCUAG----------ACCuGCU---GCUCCAGgAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.