miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 3' -56 NC_005261.1 + 5496 0.68 0.829918
Target:  5'- gGGGGguagCUGGggccgcggcagcgGCGGCGAGGccgccggCUUCGGCg -3'
miRNA:   3'- -CUCUa---GACC-------------UGCUGCUCCa------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 5575 0.67 0.862584
Target:  5'- gGAGAUggGGGCGcCGAGGgcgcccgCCUCgaGGCc -3'
miRNA:   3'- -CUCUAgaCCUGCuGCUCCa------GGAG--CCG- -5'
23756 3' -56 NC_005261.1 + 9637 0.67 0.877287
Target:  5'- uGGGggCUGgGugGGCGGGGcCCacUCGGg -3'
miRNA:   3'- -CUCuaGAC-CugCUGCUCCaGG--AGCCg -5'
23756 3' -56 NC_005261.1 + 12760 0.67 0.877287
Target:  5'- cGAGGUCguaGGCGGCGguggcgggGGGcUCgUCGGCg -3'
miRNA:   3'- -CUCUAGac-CUGCUGC--------UCC-AGgAGCCG- -5'
23756 3' -56 NC_005261.1 + 15847 0.67 0.870041
Target:  5'- cGAGcgCgcuaGAgGACGAGGUCg-CGGCa -3'
miRNA:   3'- -CUCuaGac--CUgCUGCUCCAGgaGCCG- -5'
23756 3' -56 NC_005261.1 + 17544 0.67 0.85492
Target:  5'- ----aCUGGGCGGCGcGGGcCCgccguUCGGCg -3'
miRNA:   3'- cucuaGACCUGCUGC-UCCaGG-----AGCCG- -5'
23756 3' -56 NC_005261.1 + 19121 0.69 0.777794
Target:  5'- -cGGUCggugGGGCuaGGCGGGaacUCCUCGGCg -3'
miRNA:   3'- cuCUAGa---CCUG--CUGCUCc--AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 19947 0.69 0.777794
Target:  5'- ----cCUGGGCGGgggUGGGGcggCCUCGGCu -3'
miRNA:   3'- cucuaGACCUGCU---GCUCCa--GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 24205 0.69 0.768464
Target:  5'- aGGAUCgu--CGGCGGGGUCCUgcaaaGGCa -3'
miRNA:   3'- cUCUAGaccuGCUGCUCCAGGAg----CCG- -5'
23756 3' -56 NC_005261.1 + 28117 0.66 0.884315
Target:  5'- aGAGGgggGGGCcucgaGGCGGGcGcCCUCGGCg -3'
miRNA:   3'- -CUCUagaCCUG-----CUGCUC-CaGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 30473 0.68 0.822328
Target:  5'- cGGGGg--GGACGAgGAGGccggggCCUCGGa -3'
miRNA:   3'- -CUCUagaCCUGCUgCUCCa-----GGAGCCg -5'
23756 3' -56 NC_005261.1 + 39245 0.71 0.649695
Target:  5'- cGAGGUCUccGGCGaggucuccaGCGAGGUCUUCGGg -3'
miRNA:   3'- -CUCUAGAc-CUGC---------UGCUCCAGGAGCCg -5'
23756 3' -56 NC_005261.1 + 39724 0.68 0.819767
Target:  5'- gGGGGUUUGGGgGGCG-GGUgccccagucgcggaUCUCGGCc -3'
miRNA:   3'- -CUCUAGACCUgCUGCuCCA--------------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 43848 0.72 0.588602
Target:  5'- cGAGggCgaGGACGcggccGCGucGUCCUCGGCg -3'
miRNA:   3'- -CUCuaGa-CCUGC-----UGCucCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 47708 0.67 0.877287
Target:  5'- --cGUCgGcGGCGuCGGGGgccUCCUCGGCg -3'
miRNA:   3'- cucUAGaC-CUGCuGCUCC---AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 49171 0.67 0.847055
Target:  5'- ------cGGccACGGCGGGGUgCUCGGCc -3'
miRNA:   3'- cucuagaCC--UGCUGCUCCAgGAGCCG- -5'
23756 3' -56 NC_005261.1 + 52439 0.69 0.768464
Target:  5'- --cGUCcaGGGCcACGAGGUCCcCGGCg -3'
miRNA:   3'- cucUAGa-CCUGcUGCUCCAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 57846 0.71 0.629302
Target:  5'- cGGGcgC-GGGCGGCaAGG-CCUCGGCg -3'
miRNA:   3'- -CUCuaGaCCUGCUGcUCCaGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 58224 0.78 0.299353
Target:  5'- cAGcgCgcccGcGGCGGCGGGGUCCUCGGCc -3'
miRNA:   3'- cUCuaGa---C-CUGCUGCUCCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 60323 0.67 0.870041
Target:  5'- -cGAUCaGGugGACGAcGGUgUuugCGGCg -3'
miRNA:   3'- cuCUAGaCCugCUGCU-CCAgGa--GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.