miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 3' -56 NC_005261.1 + 60833 0.69 0.777794
Target:  5'- gGAGAUCaucgGcGGCGGCGAGGUCg-CGcGCc -3'
miRNA:   3'- -CUCUAGa---C-CUGCUGCUCCAGgaGC-CG- -5'
23756 3' -56 NC_005261.1 + 63385 0.68 0.830752
Target:  5'- cGGGUCgcccuggccgUGGuCGAacaUGAGGUCgUCGGCg -3'
miRNA:   3'- cUCUAG----------ACCuGCU---GCUCCAGgAGCCG- -5'
23756 3' -56 NC_005261.1 + 74493 0.66 0.910172
Target:  5'- cGGGAUCUcggcgcucuucgGGGCGGCGccGGGgCCaUGGCg -3'
miRNA:   3'- -CUCUAGA------------CCUGCUGC--UCCaGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 75572 0.67 0.870041
Target:  5'- gGGGcgCUGGGCGGCGGcgcGG-CgCUCGcGCg -3'
miRNA:   3'- -CUCuaGACCUGCUGCU---CCaG-GAGC-CG- -5'
23756 3' -56 NC_005261.1 + 77768 0.7 0.719198
Target:  5'- cGGGG-CggcggGGACGACGAGG-CCUacuacccCGGCg -3'
miRNA:   3'- -CUCUaGa----CCUGCUGCUCCaGGA-------GCCG- -5'
23756 3' -56 NC_005261.1 + 83910 0.74 0.49945
Target:  5'- cGGGcUCgGGAcCGACGGGGUCCgagcgcgCGGCc -3'
miRNA:   3'- -CUCuAGaCCU-GCUGCUCCAGGa------GCCG- -5'
23756 3' -56 NC_005261.1 + 84118 0.66 0.884315
Target:  5'- gGGGAgggGGGCagcgGGCGGGGUcgcuggcgggCCUCGGCc -3'
miRNA:   3'- -CUCUagaCCUG----CUGCUCCA----------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 88738 0.71 0.677125
Target:  5'- uGAGGgccagCUGGugGACGccauGGuggcggcgcugcgcUCCUCGGCc -3'
miRNA:   3'- -CUCUa----GACCugCUGCu---CC--------------AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 89052 0.66 0.916057
Target:  5'- ----gCUGGACaACGAGGgcuucaccagCUUCGGCu -3'
miRNA:   3'- cucuaGACCUGcUGCUCCa---------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 90202 0.66 0.904054
Target:  5'- gGAGcgCggGGGCGGCgGAGcGcCCUCGcGCg -3'
miRNA:   3'- -CUCuaGa-CCUGCUG-CUC-CaGGAGC-CG- -5'
23756 3' -56 NC_005261.1 + 90883 0.72 0.619105
Target:  5'- -cGcgCUGGGCGACGgcauggcgcggcAGGUC-UCGGCg -3'
miRNA:   3'- cuCuaGACCUGCUGC------------UCCAGgAGCCG- -5'
23756 3' -56 NC_005261.1 + 98092 0.68 0.838997
Target:  5'- gGAGaAUCUGGgggcgcggcggGCGGCGAGGcuggggacgCCgCGGCa -3'
miRNA:   3'- -CUC-UAGACC-----------UGCUGCUCCa--------GGaGCCG- -5'
23756 3' -56 NC_005261.1 + 98975 0.68 0.796057
Target:  5'- cAGGUCccGGAgcACGucGUCCUCGGCa -3'
miRNA:   3'- cUCUAGa-CCUgcUGCucCAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 103514 0.66 0.891122
Target:  5'- ------cGGACGGCGGcGUCCgCGGCa -3'
miRNA:   3'- cucuagaCCUGCUGCUcCAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 104708 0.67 0.847055
Target:  5'- aGAGcggCUGGACGGcCGAGGgcgCgUCGuGCc -3'
miRNA:   3'- -CUCua-GACCUGCU-GCUCCa--GgAGC-CG- -5'
23756 3' -56 NC_005261.1 + 106861 0.68 0.822328
Target:  5'- ----cCUGGGgGGCGGGcGUCCgCGGCc -3'
miRNA:   3'- cucuaGACCUgCUGCUC-CAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 112684 0.66 0.897703
Target:  5'- cGAGGggCUGGGCGuCGAGG-CCgugccCGuGCa -3'
miRNA:   3'- -CUCUa-GACCUGCuGCUCCaGGa----GC-CG- -5'
23756 3' -56 NC_005261.1 + 118009 0.66 0.883623
Target:  5'- cGGcgCUGGACGcugucggacgcacGCGGGG-CC-CGGCc -3'
miRNA:   3'- cUCuaGACCUGC-------------UGCUCCaGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 121454 0.69 0.759013
Target:  5'- uGGGGcCgucGAUGGCGAGcUCCUCGGCg -3'
miRNA:   3'- -CUCUaGac-CUGCUGCUCcAGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 127374 0.66 0.910172
Target:  5'- aGGAUgucgUUGGcgGCGGCGAGGagCC-CGGCg -3'
miRNA:   3'- cUCUA----GACC--UGCUGCUCCa-GGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.