miRNA display CGI


Results 41 - 60 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 127379 0.66 0.613178
Target:  5'- gUCGuuGGcGGCGgCgaggAGCCCGgCGCCCu -3'
miRNA:   3'- -GGCggCCcUUGCgG----UCGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 14835 0.66 0.613178
Target:  5'- gCGCCGGGAgcacggcagcagGCGgCGGCgCaUCGCgCa -3'
miRNA:   3'- gGCGGCCCU------------UGCgGUCGgGcAGCGgG- -5'
23756 5' -63.3 NC_005261.1 + 126067 0.66 0.613178
Target:  5'- gCCaGCCGcc--CGCCGGCCuCGgcgggcgCGCCCa -3'
miRNA:   3'- -GG-CGGCccuuGCGGUCGG-GCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 83030 0.66 0.613178
Target:  5'- gCCcCCGGGAGgGCC-GCUCGcCGCg- -3'
miRNA:   3'- -GGcGGCCCUUgCGGuCGGGCaGCGgg -5'
23756 5' -63.3 NC_005261.1 + 118889 0.66 0.613178
Target:  5'- aCCG-CGGGcGCGCUgguGGCCUG-CGUCUg -3'
miRNA:   3'- -GGCgGCCCuUGCGG---UCGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 17544 0.66 0.613178
Target:  5'- --aCUGGGcGGCGCgGGCCCGcCGUUCg -3'
miRNA:   3'- ggcGGCCC-UUGCGgUCGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 39595 0.66 0.613178
Target:  5'- gCGCC--GAGCGCCGcgcgccCCCGcCGCCCc -3'
miRNA:   3'- gGCGGccCUUGCGGUc-----GGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 97798 0.66 0.613178
Target:  5'- -gGCCGGcGAcCGUCcGCCgG-CGCCCc -3'
miRNA:   3'- ggCGGCC-CUuGCGGuCGGgCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 93474 0.66 0.613178
Target:  5'- gUGCCGGG-GCGCg----CGUCGCCCg -3'
miRNA:   3'- gGCGGCCCuUGCGgucggGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 76589 0.66 0.613178
Target:  5'- gCGCgagCGGGuggcgcgcGCGCUgccGCCCGcCGCCCc -3'
miRNA:   3'- gGCG---GCCCu-------UGCGGu--CGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 104536 0.66 0.613178
Target:  5'- gCCGCCaccaGGcgcagcuuGGCGUCcGCCagGUCGCCCa -3'
miRNA:   3'- -GGCGGc---CC--------UUGCGGuCGGg-CAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 38900 0.66 0.613178
Target:  5'- aCGUCGuccuucuccGGcGCGCgGGCCCGcgCGCCa -3'
miRNA:   3'- gGCGGC---------CCuUGCGgUCGGGCa-GCGGg -5'
23756 5' -63.3 NC_005261.1 + 51186 0.66 0.613178
Target:  5'- gCGCUGGcGACGCUcGCCa--CGCCCc -3'
miRNA:   3'- gGCGGCCcUUGCGGuCGGgcaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 99010 0.66 0.613178
Target:  5'- gCGUCGcGAGCGgCGGCgCGgcggcgcgCGCCCa -3'
miRNA:   3'- gGCGGCcCUUGCgGUCGgGCa-------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 56058 0.66 0.613178
Target:  5'- aUGuUCGGGGGCGCCcugggcgagcAGUCCGcUCGCUa -3'
miRNA:   3'- gGC-GGCCCUUGCGG----------UCGGGC-AGCGGg -5'
23756 5' -63.3 NC_005261.1 + 77691 0.66 0.613178
Target:  5'- -gGCCGGGcuACGaCGGCCCccucgaccGcCGCCCc -3'
miRNA:   3'- ggCGGCCCu-UGCgGUCGGG--------CaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 65788 0.66 0.613178
Target:  5'- aCCGCggCGGGAAcaucCGCgGGUCgGggUGCCCg -3'
miRNA:   3'- -GGCG--GCCCUU----GCGgUCGGgCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 15953 0.66 0.61029
Target:  5'- -aGCCGGGGGCGagUggcgggcgggggagGGCCCGggcCGCUCa -3'
miRNA:   3'- ggCGGCCCUUGCg-G--------------UCGGGCa--GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 138003 0.66 0.603554
Target:  5'- gCGgCGGcuGCGgCGGCCCG-CaGCCCg -3'
miRNA:   3'- gGCgGCCcuUGCgGUCGGGCaG-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 111780 0.66 0.603554
Target:  5'- gCGcCCGGGGugugccccuggACGCCuGGCUcgCGUCGgCCg -3'
miRNA:   3'- gGC-GGCCCU-----------UGCGG-UCGG--GCAGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.