miRNA display CGI


Results 21 - 40 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 133283 0.66 0.622816
Target:  5'- gCGCCGG---CGCCcGCCuCGUgGCCg -3'
miRNA:   3'- gGCGGCCcuuGCGGuCGG-GCAgCGGg -5'
23756 5' -63.3 NC_005261.1 + 34453 0.66 0.622816
Target:  5'- gCGCCGGG-GCaCgGGCCgGggGCCCc -3'
miRNA:   3'- gGCGGCCCuUGcGgUCGGgCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 2378 0.66 0.622816
Target:  5'- gCCGCCGcagcGGcGCGCUGGCggCGagcgCGCCCg -3'
miRNA:   3'- -GGCGGC----CCuUGCGGUCGg-GCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 22655 0.66 0.622816
Target:  5'- gCGCUGGcGGCGCCuGGgCgG-CGCCCg -3'
miRNA:   3'- gGCGGCCcUUGCGG-UCgGgCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 77031 0.66 0.622816
Target:  5'- aCGCCGaGGccgcGCGCgCGGCCCucggcgaccgCGCCUg -3'
miRNA:   3'- gGCGGC-CCu---UGCG-GUCGGGca--------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1394 0.66 0.622816
Target:  5'- aCGCCGGG--CGCCgcGGCCgcggcggcggCGggggcggCGCCCg -3'
miRNA:   3'- gGCGGCCCuuGCGG--UCGG----------GCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 75815 0.66 0.622816
Target:  5'- aCGCUGGu-GC-CCGGCgCGgccgCGCCCg -3'
miRNA:   3'- gGCGGCCcuUGcGGUCGgGCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 28159 0.66 0.622816
Target:  5'- uCCGCCGcucGGGCGCCc-CCCGucUCGCUg -3'
miRNA:   3'- -GGCGGCc--CUUGCGGucGGGC--AGCGGg -5'
23756 5' -63.3 NC_005261.1 + 125537 0.66 0.622816
Target:  5'- gCCGCCcgcaGGGcGGCGCCagaGGCCUuaCGCCa -3'
miRNA:   3'- -GGCGG----CCC-UUGCGG---UCGGGcaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 3920 0.66 0.622816
Target:  5'- gCCGCCGG---CGCCGGCCUccggGUagGCCa -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGGG----CAg-CGGg -5'
23756 5' -63.3 NC_005261.1 + 90196 0.66 0.622816
Target:  5'- aCGCaGGGAGCGCgGGggCGgcggagCGCCCu -3'
miRNA:   3'- gGCGgCCCUUGCGgUCggGCa-----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 97142 0.66 0.622816
Target:  5'- aCGCuCGGaGGCGCUGGCgCCG--GCCCg -3'
miRNA:   3'- gGCG-GCCcUUGCGGUCG-GGCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 45237 0.66 0.621851
Target:  5'- aCCGCCauGGAGgacuuggucuuCGCCAccaccguGCCCGcCGCCg -3'
miRNA:   3'- -GGCGGc-CCUU-----------GCGGU-------CGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 108258 0.66 0.619923
Target:  5'- cCCGCCGcGGccAGCGUCuccacGGCCUGguccggcguugcgcUCGCCUg -3'
miRNA:   3'- -GGCGGC-CC--UUGCGG-----UCGGGC--------------AGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 56757 0.66 0.619923
Target:  5'- gUCGCCuucaacACGCCGGCCUucucagacgccgcgGUUGCCCa -3'
miRNA:   3'- -GGCGGcccu--UGCGGUCGGG--------------CAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 48292 0.66 0.617032
Target:  5'- gCCGCUuccagcgaggccucgGGGGGCGCgucgGGCCCGg-GCUCg -3'
miRNA:   3'- -GGCGG---------------CCCUUGCGg---UCGGGCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 38900 0.66 0.613178
Target:  5'- aCGUCGuccuucuccGGcGCGCgGGCCCGcgCGCCa -3'
miRNA:   3'- gGCGGC---------CCuUGCGgUCGGGCa-GCGGg -5'
23756 5' -63.3 NC_005261.1 + 14835 0.66 0.613178
Target:  5'- gCGCCGGGAgcacggcagcagGCGgCGGCgCaUCGCgCa -3'
miRNA:   3'- gGCGGCCCU------------UGCgGUCGgGcAGCGgG- -5'
23756 5' -63.3 NC_005261.1 + 76589 0.66 0.613178
Target:  5'- gCGCgagCGGGuggcgcgcGCGCUgccGCCCGcCGCCCc -3'
miRNA:   3'- gGCG---GCCCu-------UGCGGu--CGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 51186 0.66 0.613178
Target:  5'- gCGCUGGcGACGCUcGCCa--CGCCCc -3'
miRNA:   3'- gGCGGCCcUUGCGGuCGGgcaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.