miRNA display CGI


Results 21 - 40 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 28569 0.78 0.127583
Target:  5'- cCCGCCGGGccgaggcgcgcgAGCGCCGGCggGcCGCCCg -3'
miRNA:   3'- -GGCGGCCC------------UUGCGGUCGggCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 124243 0.77 0.130422
Target:  5'- gCCGCCGcGGGcaggcgccgcgcgGCGCC-GCCCGcgCGCCCc -3'
miRNA:   3'- -GGCGGC-CCU-------------UGCGGuCGGGCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 97547 0.77 0.137272
Target:  5'- cCCGgCGG---UGCCGGCCCGUCcGCCCg -3'
miRNA:   3'- -GGCgGCCcuuGCGGUCGGGCAG-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 30285 0.77 0.144102
Target:  5'- cCCGCCuGG-ACGCUGGCCCGcgCGCUCu -3'
miRNA:   3'- -GGCGGcCCuUGCGGUCGGGCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 81673 0.77 0.144102
Target:  5'- gCCGCUGGGGcacgACuGCC-GCCCGUCcggGCCCg -3'
miRNA:   3'- -GGCGGCCCU----UG-CGGuCGGGCAG---CGGG- -5'
23756 5' -63.3 NC_005261.1 + 69233 0.77 0.147633
Target:  5'- gCGCUGGGGcgguucgccgagGCGCUGGCCCG-CGCCg -3'
miRNA:   3'- gGCGGCCCU------------UGCGGUCGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 15782 0.76 0.151242
Target:  5'- gCCGCUGGcGGGCGCC-GCCCGcgCGgCCa -3'
miRNA:   3'- -GGCGGCC-CUUGCGGuCGGGCa-GCgGG- -5'
23756 5' -63.3 NC_005261.1 + 70949 0.76 0.151242
Target:  5'- uCCGCCGGGAACGCCGacGCCgCGaCGgCg -3'
miRNA:   3'- -GGCGGCCCUUGCGGU--CGG-GCaGCgGg -5'
23756 5' -63.3 NC_005261.1 + 16255 0.76 0.154931
Target:  5'- gCGCCGGGGcCGCCggGGCCgGgcuucggcUCGCCCg -3'
miRNA:   3'- gGCGGCCCUuGCGG--UCGGgC--------AGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 32667 0.76 0.154931
Target:  5'- gCGCCGcuAACGCCGccGCCCGcCGCCCu -3'
miRNA:   3'- gGCGGCccUUGCGGU--CGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 30724 0.76 0.158701
Target:  5'- gCGCCGGGc-CGCCAgGCCCGa-GCCCc -3'
miRNA:   3'- gGCGGCCCuuGCGGU-CGGGCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 19758 0.76 0.158701
Target:  5'- cCCGCgCGGG--CGCgGGcCCCGUCGCCUc -3'
miRNA:   3'- -GGCG-GCCCuuGCGgUC-GGGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 106460 0.76 0.158701
Target:  5'- uCCGCgCGGGcguccaagAGCGCCGGgcucccCUCGUCGCCCu -3'
miRNA:   3'- -GGCG-GCCC--------UUGCGGUC------GGGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 37728 0.76 0.162554
Target:  5'- cCCGCCGGa---GCCc-CCCGUCGCCCc -3'
miRNA:   3'- -GGCGGCCcuugCGGucGGGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 12087 0.76 0.164119
Target:  5'- gCGCCGGGGcggcucaaaggcgcgGCGCCAGCUCuagCGCCa -3'
miRNA:   3'- gGCGGCCCU---------------UGCGGUCGGGca-GCGGg -5'
23756 5' -63.3 NC_005261.1 + 28763 0.76 0.166491
Target:  5'- gCgGCCGGGGGCGCCugGGCCgCGgcgcgggCGCUCg -3'
miRNA:   3'- -GgCGGCCCUUGCGG--UCGG-GCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 131933 0.76 0.166491
Target:  5'- gCGCgCGGGAcCGCgGuGCCCG-CGCCCg -3'
miRNA:   3'- gGCG-GCCCUuGCGgU-CGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 16742 0.76 0.170107
Target:  5'- gCCGCgCGGGcgccgccaugaccAGCcCCAGCUCGUCGUCCg -3'
miRNA:   3'- -GGCG-GCCC-------------UUGcGGUCGGGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 5265 0.76 0.170107
Target:  5'- cCCGCCGGGagacgccAugGCCGGCCgCGgugCGCgCg -3'
miRNA:   3'- -GGCGGCCC-------UugCGGUCGG-GCa--GCGgG- -5'
23756 5' -63.3 NC_005261.1 + 104457 0.76 0.170514
Target:  5'- gCCGCCGGcGGCGCC-GUCCaccUCGCCCu -3'
miRNA:   3'- -GGCGGCCcUUGCGGuCGGGc--AGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.