miRNA display CGI


Results 21 - 40 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 13858 0.66 0.574817
Target:  5'- gUCGCCGGcguCGCCggcGGCCCgGUCGUa- -3'
miRNA:   3'- -GGCGGCCcuuGCGG---UCGGG-CAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 68260 0.66 0.574817
Target:  5'- aCUGCCuGGcGCGCCugcGCCCG-CGCg- -3'
miRNA:   3'- -GGCGGcCCuUGCGGu--CGGGCaGCGgg -5'
23756 5' -63.3 NC_005261.1 + 102923 0.66 0.574817
Target:  5'- uCCGCCGcuu-CGCgCAGCgCCGcCGCCg -3'
miRNA:   3'- -GGCGGCccuuGCG-GUCG-GGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 20197 0.66 0.574817
Target:  5'- gCGaagCGGGGcCGCCaaaGGcCCCG-CGCCCg -3'
miRNA:   3'- gGCg--GCCCUuGCGG---UC-GGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 58237 0.66 0.581499
Target:  5'- gCGgCGGGGuccucggccaugccGCGCCGcGCCgCGcUCGCCg -3'
miRNA:   3'- gGCgGCCCU--------------UGCGGU-CGG-GC-AGCGGg -5'
23756 5' -63.3 NC_005261.1 + 42098 0.66 0.584367
Target:  5'- aCCG-CGGuGAGgaugUGCCGGCCCagcaGCCCg -3'
miRNA:   3'- -GGCgGCC-CUU----GCGGUCGGGcag-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 4531 0.66 0.593948
Target:  5'- gCGCCGcGGcgagGGCGCCgGGCCC-UgGCCUu -3'
miRNA:   3'- gGCGGC-CC----UUGCGG-UCGGGcAgCGGG- -5'
23756 5' -63.3 NC_005261.1 + 106109 0.66 0.574817
Target:  5'- uCgGCCGGcguCGCCGGCgCGcgCGCgCCg -3'
miRNA:   3'- -GgCGGCCcuuGCGGUCGgGCa-GCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 117260 0.66 0.584367
Target:  5'- uUCGCCGcgcgccucgaGGAcggcgagccugGCGCCgAGCCCGcccucgaGCCCa -3'
miRNA:   3'- -GGCGGC----------CCU-----------UGCGG-UCGGGCag-----CGGG- -5'
23756 5' -63.3 NC_005261.1 + 91128 0.66 0.593948
Target:  5'- gCGCCGcGGccGAgGCCucAGCCgUGcCGCCCg -3'
miRNA:   3'- gGCGGC-CC--UUgCGG--UCGG-GCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 73449 0.66 0.584367
Target:  5'- -gGCCGGccGCGuCCGcGUCCGcgCGCCCc -3'
miRNA:   3'- ggCGGCCcuUGC-GGU-CGGGCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 108357 0.66 0.593948
Target:  5'- gCCGCCGucgcaGGCGCaucccuGCCCGcguccgCGCCCg -3'
miRNA:   3'- -GGCGGCcc---UUGCGgu----CGGGCa-----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 61856 0.66 0.571959
Target:  5'- aCCGCCaccgcucccucagaGGGcaccacgaugGGCGCCuucucGCCCGUgCGCaCCa -3'
miRNA:   3'- -GGCGG--------------CCC----------UUGCGGu----CGGGCA-GCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 104662 0.66 0.593948
Target:  5'- gCGCUGGcGGGCGUguGCUgCGgcagCGCCUg -3'
miRNA:   3'- gGCGGCC-CUUGCGguCGG-GCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 82458 0.66 0.584367
Target:  5'- gCCGCCGuuGcCGCCcccGGCCCcGUC-CCCg -3'
miRNA:   3'- -GGCGGCccUuGCGG---UCGGG-CAGcGGG- -5'
23756 5' -63.3 NC_005261.1 + 53220 0.66 0.574817
Target:  5'- aCGCggucugggUGGGAugcgGCGCCAGCUCGccccgcgCGUCCc -3'
miRNA:   3'- gGCG--------GCCCU----UGCGGUCGGGCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 126453 0.66 0.584367
Target:  5'- -gGCCaGccGCGCCAGCgCGcUCGCCUc -3'
miRNA:   3'- ggCGGcCcuUGCGGUCGgGC-AGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 69091 0.66 0.593948
Target:  5'- gCGCUGGGgcAugGCCAGCUgcuaCGgggCGCUa -3'
miRNA:   3'- gGCGGCCC--UugCGGUCGG----GCa--GCGGg -5'
23756 5' -63.3 NC_005261.1 + 74946 0.66 0.574817
Target:  5'- gCgGCgCGGGcGCGCUcggcgcgcucgaGGCCgCG-CGCCCg -3'
miRNA:   3'- -GgCG-GCCCuUGCGG------------UCGG-GCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 99225 0.66 0.574817
Target:  5'- aCCGCgGcaGGcGCGUCGGCgUCG-CGCCCg -3'
miRNA:   3'- -GGCGgC--CCuUGCGGUCG-GGCaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.