miRNA display CGI


Results 21 - 40 of 603 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 3731 0.69 0.405306
Target:  5'- gCUGCCGGacGCGCCGGCggcgcaCCG-CGCCg -3'
miRNA:   3'- -GGCGGCCcuUGCGGUCG------GGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 3841 0.68 0.49109
Target:  5'- gCGCUGGcGGcagcgGCGCCGGCgCCGcgCGgCCg -3'
miRNA:   3'- gGCGGCC-CU-----UGCGGUCG-GGCa-GCgGG- -5'
23756 5' -63.3 NC_005261.1 + 3891 0.66 0.622816
Target:  5'- -aGCuCGGcGAGCG-CGGCgCGggCGCCCg -3'
miRNA:   3'- ggCG-GCC-CUUGCgGUCGgGCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 3920 0.66 0.622816
Target:  5'- gCCGCCGG---CGCCGGCCUccggGUagGCCa -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGGG----CAg-CGGg -5'
23756 5' -63.3 NC_005261.1 + 4149 0.66 0.592989
Target:  5'- gCCGCUGcagcaGGcGCGCCAGCugcagguCCGg-GCCCg -3'
miRNA:   3'- -GGCGGC-----CCuUGCGGUCG-------GGCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 4396 0.66 0.632459
Target:  5'- gCgGCCGGGcGGCGgCGGCgCGcUGCCg -3'
miRNA:   3'- -GgCGGCCC-UUGCgGUCGgGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 4432 0.73 0.258947
Target:  5'- cUCGCCGGaGGGCGUCAGCagCGg-GCCCu -3'
miRNA:   3'- -GGCGGCC-CUUGCGGUCGg-GCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 4485 0.68 0.464414
Target:  5'- gCGCCGcGGcguagccuGCGCgGGCCCcagucgcgCGCCCg -3'
miRNA:   3'- gGCGGC-CCu-------UGCGgUCGGGca------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 4531 0.66 0.593948
Target:  5'- gCGCCGcGGcgagGGCGCCgGGCCC-UgGCCUu -3'
miRNA:   3'- gGCGGC-CC----UUGCGG-UCGGGcAgCGGG- -5'
23756 5' -63.3 NC_005261.1 + 4582 0.68 0.49109
Target:  5'- uCCGgCGGG-GCGCCc-CCCGgCGCCa -3'
miRNA:   3'- -GGCgGCCCuUGCGGucGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 4925 0.71 0.315749
Target:  5'- uCCGCCGcGGccgcgAGCGCCcgcgccgcGGCCCaggCGCCCc -3'
miRNA:   3'- -GGCGGC-CC-----UUGCGG--------UCGGGca-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 5058 0.66 0.613178
Target:  5'- gUCGUCGGcccCGCCGGCCuCGUCaCUCu -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGG-GCAGcGGG- -5'
23756 5' -63.3 NC_005261.1 + 5135 0.69 0.41346
Target:  5'- cCCGCCGGcGcucgcGCGCCucGGCCCGgcggGCCg -3'
miRNA:   3'- -GGCGGCC-Cu----UGCGG--UCGGGCag--CGGg -5'
23756 5' -63.3 NC_005261.1 + 5265 0.76 0.170107
Target:  5'- cCCGCCGGGagacgccAugGCCGGCCgCGgugCGCgCg -3'
miRNA:   3'- -GGCGGCCC-------UugCGGUCGG-GCa--GCGgG- -5'
23756 5' -63.3 NC_005261.1 + 5530 0.7 0.373727
Target:  5'- gCCGCCGGcuucGGCGCgCAGCgagaCGgggggCGCCCg -3'
miRNA:   3'- -GGCGGCCc---UUGCG-GUCGg---GCa----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 5585 0.73 0.258947
Target:  5'- gCGCCGaGGGCGCCcGCCuCGagGCCCc -3'
miRNA:   3'- gGCGGCcCUUGCGGuCGG-GCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 6239 0.71 0.336667
Target:  5'- gCGCCcgGGGAGgGCCuGCCCG-C-CCCg -3'
miRNA:   3'- gGCGG--CCCUUgCGGuCGGGCaGcGGG- -5'
23756 5' -63.3 NC_005261.1 + 6349 0.69 0.421713
Target:  5'- cCCaCCGGccucGCGCCGGUCCGgCGCCg -3'
miRNA:   3'- -GGcGGCCcu--UGCGGUCGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 6440 0.66 0.632459
Target:  5'- gCgGuCCGGGG--GCCGGCCgGgcUGCCCg -3'
miRNA:   3'- -GgC-GGCCCUugCGGUCGGgCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 8501 0.7 0.381464
Target:  5'- gCGCCagcGGGGGgGCCGGCCaaucgcagCGagGCCCa -3'
miRNA:   3'- gGCGG---CCCUUgCGGUCGG--------GCagCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.