miRNA display CGI


Results 1 - 20 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 90 0.72 0.270806
Target:  5'- gUGCgGGGcGCGCCcccgGGcCCCGcCGCCCg -3'
miRNA:   3'- gGCGgCCCuUGCGG----UC-GGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 332 0.66 0.603554
Target:  5'- gCGgCGGcuGCGgCGGCCCG-CaGCCCg -3'
miRNA:   3'- gGCgGCCcuUGCgGUCGGGCaG-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 626 0.68 0.473224
Target:  5'- aCGCaGGGGAuguggcggcggcCGCCAGCgCCG-CGUCCc -3'
miRNA:   3'- gGCGgCCCUU------------GCGGUCG-GGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1081 0.75 0.183106
Target:  5'- cCCGCUccagGGcGAGC-CCGGCUCGUCGUCCg -3'
miRNA:   3'- -GGCGG----CC-CUUGcGGUCGGGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1143 0.7 0.379132
Target:  5'- aCGCggaCGaGGAgagcacuuccacgcGCGCCGGCCCG-CGCCg -3'
miRNA:   3'- gGCG---GC-CCU--------------UGCGGUCGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 1229 0.71 0.315749
Target:  5'- gCCGCCGu---CGCCGGCCCcGggaaGCCCg -3'
miRNA:   3'- -GGCGGCccuuGCGGUCGGG-Cag--CGGG- -5'
23756 5' -63.3 NC_005261.1 + 1259 0.67 0.55583
Target:  5'- uCCGugcCCGGGGgugacugugccgGCGcCCAGgccggcggggcuCCCGUCGCCg -3'
miRNA:   3'- -GGC---GGCCCU------------UGC-GGUC------------GGGCAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 1324 0.66 0.574817
Target:  5'- gCGCuCcGGGACGCCGccGCgCCG-CGCCUg -3'
miRNA:   3'- gGCG-GcCCUUGCGGU--CG-GGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1394 0.66 0.622816
Target:  5'- aCGCCGGG--CGCCgcGGCCgcggcggcggCGggggcggCGCCCg -3'
miRNA:   3'- gGCGGCCCuuGCGG--UCGG----------GCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1499 0.73 0.234889
Target:  5'- aCCGCCGcGGccggcagcucgucgGGCGCCAGCUccagcgcgCGcCGCCCg -3'
miRNA:   3'- -GGCGGC-CC--------------UUGCGGUCGG--------GCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 1873 0.68 0.506519
Target:  5'- gCGCCGcGAggccagcacggcgcGCGCCAGCgCG-CGCCg -3'
miRNA:   3'- gGCGGCcCU--------------UGCGGUCGgGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 2080 0.71 0.34386
Target:  5'- gCGCCGcGGAAgGCCAGgucCCgCGUCGCg- -3'
miRNA:   3'- gGCGGC-CCUUgCGGUC---GG-GCAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 2128 0.68 0.482117
Target:  5'- gCGCCGaGcGCGCuCAcGUCCGgcgCGCCCg -3'
miRNA:   3'- gGCGGCcCuUGCG-GU-CGGGCa--GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 2277 0.72 0.270806
Target:  5'- cUCGCCGGGcGGCGCC-GCCag-CGCCUc -3'
miRNA:   3'- -GGCGGCCC-UUGCGGuCGGgcaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 2378 0.66 0.622816
Target:  5'- gCCGCCGcagcGGcGCGCUGGCggCGagcgCGCCCg -3'
miRNA:   3'- -GGCGGC----CCuUGCGGUCGg-GCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 2675 0.69 0.41346
Target:  5'- gCGCUGGGGacccggcggcGCGCCGGCuuuuggCCGgCGCCg -3'
miRNA:   3'- gGCGGCCCU----------UGCGGUCG------GGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 2815 0.7 0.373727
Target:  5'- -gGCCGGGcGGCcCCAGCCCGa-GCUCg -3'
miRNA:   3'- ggCGGCCC-UUGcGGUCGGGCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 2941 0.72 0.308998
Target:  5'- aCCGCCGcGGccgGGCuCCGGCCCGgacuaggGCCCg -3'
miRNA:   3'- -GGCGGC-CC---UUGcGGUCGGGCag-----CGGG- -5'
23756 5' -63.3 NC_005261.1 + 3009 0.7 0.389307
Target:  5'- gCGCCGGGGcuccCGCgGGCCucccCGUC-CCCg -3'
miRNA:   3'- gGCGGCCCUu---GCGgUCGG----GCAGcGGG- -5'
23756 5' -63.3 NC_005261.1 + 3408 0.69 0.438514
Target:  5'- uCCGCCGGcGGgcugaagagcGCGCgGGCCag-CGUCCa -3'
miRNA:   3'- -GGCGGCC-CU----------UGCGgUCGGgcaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.