miRNA display CGI


Results 1 - 20 of 603 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 138003 0.66 0.603554
Target:  5'- gCGgCGGcuGCGgCGGCCCG-CaGCCCg -3'
miRNA:   3'- gGCgGCCcuUGCgGUCGGGCaG-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 137773 0.72 0.270806
Target:  5'- gUGCgGGGcGCGCCcccgGGcCCCGcCGCCCg -3'
miRNA:   3'- gGCGgCCCuUGCGG----UC-GGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 136957 0.67 0.518455
Target:  5'- gUCGUCGGGcaagaGACGaagaCGGCCuCGUC-CCCg -3'
miRNA:   3'- -GGCGGCCC-----UUGCg---GUCGG-GCAGcGGG- -5'
23756 5' -63.3 NC_005261.1 + 135652 0.67 0.546404
Target:  5'- cCUGCgCGGGcGCgGgCGGCCC-UCGCUCg -3'
miRNA:   3'- -GGCG-GCCCuUG-CgGUCGGGcAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 135291 0.73 0.253178
Target:  5'- aCGgCGGGuuccgcGCGaCCGGCgUGUCGCCCu -3'
miRNA:   3'- gGCgGCCCu-----UGC-GGUCGgGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 134993 0.75 0.187482
Target:  5'- gCCGCCGGG-GCGCCccuggcgcggcgGGCCCGcacgCGgCCg -3'
miRNA:   3'- -GGCGGCCCuUGCGG------------UCGGGCa---GCgGG- -5'
23756 5' -63.3 NC_005261.1 + 134224 0.69 0.455691
Target:  5'- gCgGCCGGcAGCGUCGGCgUGgcgcacgCGCCCu -3'
miRNA:   3'- -GgCGGCCcUUGCGGUCGgGCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 134029 0.66 0.602592
Target:  5'- gCCGCCGcgcucgcGGccAugGCCGGCCaCG--GCCCg -3'
miRNA:   3'- -GGCGGC-------CC--UugCGGUCGG-GCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 133695 0.72 0.276898
Target:  5'- uCCGCUGGGAgcuGCGCgAcCCCGgCGCCg -3'
miRNA:   3'- -GGCGGCCCU---UGCGgUcGGGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 133283 0.66 0.622816
Target:  5'- gCGCCGG---CGCCcGCCuCGUgGCCg -3'
miRNA:   3'- gGCGGCCcuuGCGGuCGG-GCAgCGGg -5'
23756 5' -63.3 NC_005261.1 + 132959 0.66 0.613178
Target:  5'- gCGCCGacGugGCC-GCCuuCGUCGCCg -3'
miRNA:   3'- gGCGGCccUugCGGuCGG--GCAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 132616 0.71 0.316431
Target:  5'- gCCGCCaGGGGGCGCUGGCgCCGaggacgcgggcgcggCgGCCCu -3'
miRNA:   3'- -GGCGG-CCCUUGCGGUCG-GGCa--------------G-CGGG- -5'
23756 5' -63.3 NC_005261.1 + 132474 0.7 0.397255
Target:  5'- gCGCCGGcAGCGCCucgccGuCCUGggacgCGCCCg -3'
miRNA:   3'- gGCGGCCcUUGCGGu----C-GGGCa----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 132404 0.74 0.220762
Target:  5'- gCCGCCGccGACGCCuGGCCCG-CGCaCCc -3'
miRNA:   3'- -GGCGGCccUUGCGG-UCGGGCaGCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 132360 0.67 0.53703
Target:  5'- uCCGCCGcGGcGCGCUcGCCgCGcUCGCg- -3'
miRNA:   3'- -GGCGGC-CCuUGCGGuCGG-GC-AGCGgg -5'
23756 5' -63.3 NC_005261.1 + 132051 0.66 0.629566
Target:  5'- aCC-CCGGGGAgGUggCGGCcgaggucgcggccgCCGUCGCCg -3'
miRNA:   3'- -GGcGGCCCUUgCG--GUCG--------------GGCAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 131933 0.76 0.166491
Target:  5'- gCGCgCGGGAcCGCgGuGCCCG-CGCCCg -3'
miRNA:   3'- gGCG-GCCCUuGCGgU-CGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 131782 0.8 0.08162
Target:  5'- gCCGCUGGGccccGACGCCGcGCCCGccgCGCCUg -3'
miRNA:   3'- -GGCGGCCC----UUGCGGU-CGGGCa--GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 131530 0.67 0.543587
Target:  5'- aCGuCCGGagcuacaucgagcaGAACGUggCGGUcgCCGUCGCCCg -3'
miRNA:   3'- gGC-GGCC--------------CUUGCG--GUCG--GGCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 131421 0.68 0.50014
Target:  5'- gCUGCCGGcagcGGCGCCGGCgccccccuugcgCCG-CGCCUc -3'
miRNA:   3'- -GGCGGCCc---UUGCGGUCG------------GGCaGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.