miRNA display CGI


Results 1 - 20 of 603 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 121023 0.66 0.632459
Target:  5'- cCCGCuggcgCGGGAgaaGCGCC-GCCacaCGUCGCg- -3'
miRNA:   3'- -GGCG-----GCCCU---UGCGGuCGG---GCAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 73604 0.78 0.110079
Target:  5'- gCgGCCGcGAGCGCgCGGCCCGUCGUCg -3'
miRNA:   3'- -GgCGGCcCUUGCG-GUCGGGCAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 94310 0.78 0.112831
Target:  5'- gCGaCCcagGGGGGCGCCAGCCCGaacUCGCgCCg -3'
miRNA:   3'- gGC-GG---CCCUUGCGGUCGGGC---AGCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 100069 0.78 0.112831
Target:  5'- gCCGcCCGGGGgcGCGCCGcGCCCcUCGCCg -3'
miRNA:   3'- -GGC-GGCCCU--UGCGGU-CGGGcAGCGGg -5'
23756 5' -63.3 NC_005261.1 + 59340 0.78 0.115363
Target:  5'- cCCGCCGGGu-CGCC-GCCgucgccacgagggUGUCGCCCg -3'
miRNA:   3'- -GGCGGCCCuuGCGGuCGG-------------GCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 33860 0.78 0.11853
Target:  5'- -gGCCGGGAGgGCCc-CCCGcCGCCCg -3'
miRNA:   3'- ggCGGCCCUUgCGGucGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 100433 0.78 0.11853
Target:  5'- cCCGCCuGcGAGuacagcgccacCGCCAGCuuGUCGCCCg -3'
miRNA:   3'- -GGCGGcC-CUU-----------GCGGUCGggCAGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 34408 0.78 0.124497
Target:  5'- aUCGaCCGGGuGGCGCgCGGCCCG-CGCCUg -3'
miRNA:   3'- -GGC-GGCCC-UUGCG-GUCGGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 28569 0.78 0.127583
Target:  5'- cCCGCCGGGccgaggcgcgcgAGCGCCGGCggGcCGCCCg -3'
miRNA:   3'- -GGCGGCCC------------UUGCGGUCGggCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 94084 0.79 0.107389
Target:  5'- gCCGCCGGGAACGCCGccGUCCGU-GCg- -3'
miRNA:   3'- -GGCGGCCCUUGCGGU--CGGGCAgCGgg -5'
23756 5' -63.3 NC_005261.1 + 86868 0.79 0.107389
Target:  5'- gCCGCCGGGcGCGgCGGCCUuGgccgCGCCCu -3'
miRNA:   3'- -GGCGGCCCuUGCgGUCGGG-Ca---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 78858 0.79 0.104761
Target:  5'- cCCGCCGccGGAGCGCgAGCCgCGUCaGCCg -3'
miRNA:   3'- -GGCGGC--CCUUGCGgUCGG-GCAG-CGGg -5'
23756 5' -63.3 NC_005261.1 + 43297 0.86 0.03512
Target:  5'- cCCGCgGGGGGCGCCggcAGCCCGgccagcuUCGCCCg -3'
miRNA:   3'- -GGCGgCCCUUGCGG---UCGGGC-------AGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 97099 0.82 0.063409
Target:  5'- -gGCCGGGGGCGCCAGCCgGgccgCGgCCg -3'
miRNA:   3'- ggCGGCCCUUGCGGUCGGgCa---GCgGG- -5'
23756 5' -63.3 NC_005261.1 + 13066 0.81 0.077617
Target:  5'- cCUGCCGGGcgcgucCGCCGGCCCGUCGgCg -3'
miRNA:   3'- -GGCGGCCCuu----GCGGUCGGGCAGCgGg -5'
23756 5' -63.3 NC_005261.1 + 125595 0.81 0.077617
Target:  5'- gCGCCGGGucgaaAGCGCCAcuGCCCGccCGCCCu -3'
miRNA:   3'- gGCGGCCC-----UUGCGGU--CGGGCa-GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 20622 0.81 0.077617
Target:  5'- cCCGCaucCGGGAcUGCCGGCCCGguucgcCGCCCg -3'
miRNA:   3'- -GGCG---GCCCUuGCGGUCGGGCa-----GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 131782 0.8 0.08162
Target:  5'- gCCGCUGGGccccGACGCCGcGCCCGccgCGCCUg -3'
miRNA:   3'- -GGCGGCCC----UUGCGGU-CGGGCa--GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 95757 0.8 0.083695
Target:  5'- gCCGCCGGGGGCGCCgggAGCCuCGcgCGCUg -3'
miRNA:   3'- -GGCGGCCCUUGCGG---UCGG-GCa-GCGGg -5'
23756 5' -63.3 NC_005261.1 + 62423 0.8 0.087996
Target:  5'- cCCGCCGaGGccAGCGCgAGCCgGUCGCCg -3'
miRNA:   3'- -GGCGGC-CC--UUGCGgUCGGgCAGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.