miRNA display CGI


Results 1 - 20 of 603 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 5' -63.3 NC_005261.1 + 1324 0.66 0.574817
Target:  5'- gCGCuCcGGGACGCCGccGCgCCG-CGCCUg -3'
miRNA:   3'- gGCG-GcCCUUGCGGU--CG-GGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 47223 0.66 0.584367
Target:  5'- gCCGCCGGG-GC-UCAGCUgGg-GCCCc -3'
miRNA:   3'- -GGCGGCCCuUGcGGUCGGgCagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 97406 0.66 0.574817
Target:  5'- gCCGCgggcuuggCGGGcGCGCCGGgCC--UGCCCu -3'
miRNA:   3'- -GGCG--------GCCCuUGCGGUCgGGcaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 121023 0.66 0.632459
Target:  5'- cCCGCuggcgCGGGAgaaGCGCC-GCCacaCGUCGCg- -3'
miRNA:   3'- -GGCG-----GCCCU---UGCGGuCGG---GCAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 74946 0.66 0.574817
Target:  5'- gCgGCgCGGGcGCGCUcggcgcgcucgaGGCCgCG-CGCCCg -3'
miRNA:   3'- -GgCG-GCCCuUGCGG------------UCGG-GCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 106109 0.66 0.574817
Target:  5'- uCgGCCGGcguCGCCGGCgCGcgCGCgCCg -3'
miRNA:   3'- -GgCGGCCcuuGCGGUCGgGCa-GCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 68260 0.66 0.574817
Target:  5'- aCUGCCuGGcGCGCCugcGCCCG-CGCg- -3'
miRNA:   3'- -GGCGGcCCuUGCGGu--CGGGCaGCGgg -5'
23756 5' -63.3 NC_005261.1 + 130316 0.66 0.574817
Target:  5'- gCCGCUGc-AGCGCCauggacGGCCCGgccgCGCUCg -3'
miRNA:   3'- -GGCGGCccUUGCGG------UCGGGCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 62549 0.66 0.574817
Target:  5'- aCGCCGaGAGgcgcCGCCAGCauG-CGCCCc -3'
miRNA:   3'- gGCGGCcCUU----GCGGUCGggCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 35123 0.66 0.574817
Target:  5'- gCCGCCGGcGGCGUC-GCaCCc-CGCCCc -3'
miRNA:   3'- -GGCGGCCcUUGCGGuCG-GGcaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 99225 0.66 0.574817
Target:  5'- aCCGCgGcaGGcGCGUCGGCgUCG-CGCCCg -3'
miRNA:   3'- -GGCGgC--CCuUGCGGUCG-GGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 9958 0.66 0.574817
Target:  5'- cCCGcCCGGGGcaagccCGCCccCCCGgacgCGCCUc -3'
miRNA:   3'- -GGC-GGCCCUu-----GCGGucGGGCa---GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 102923 0.66 0.574817
Target:  5'- uCCGCCGcuu-CGCgCAGCgCCGcCGCCg -3'
miRNA:   3'- -GGCGGCccuuGCG-GUCG-GGCaGCGGg -5'
23756 5' -63.3 NC_005261.1 + 34301 0.66 0.578633
Target:  5'- aCGCCGGGAGCGagaccgacggggaGGCCgaGggGCCCc -3'
miRNA:   3'- gGCGGCCCUUGCgg-----------UCGGg-CagCGGG- -5'
23756 5' -63.3 NC_005261.1 + 61856 0.66 0.571959
Target:  5'- aCCGCCaccgcucccucagaGGGcaccacgaugGGCGCCuucucGCCCGUgCGCaCCa -3'
miRNA:   3'- -GGCGG--------------CCC----------UUGCGGu----CGGGCA-GCG-GG- -5'
23756 5' -63.3 NC_005261.1 + 13858 0.66 0.574817
Target:  5'- gUCGCCGGcguCGCCggcGGCCCgGUCGUa- -3'
miRNA:   3'- -GGCGGCCcuuGCGG---UCGGG-CAGCGgg -5'
23756 5' -63.3 NC_005261.1 + 104853 0.66 0.573864
Target:  5'- aCCGCgCGGGucacgcacgcgucGAUGUCAGCgUCGaUCGCCg -3'
miRNA:   3'- -GGCG-GCCC-------------UUGCGGUCG-GGC-AGCGGg -5'
23756 5' -63.3 NC_005261.1 + 20197 0.66 0.574817
Target:  5'- gCGaagCGGGGcCGCCaaaGGcCCCG-CGCCCg -3'
miRNA:   3'- gGCg--GCCCUuGCGG---UC-GGGCaGCGGG- -5'
23756 5' -63.3 NC_005261.1 + 53220 0.66 0.574817
Target:  5'- aCGCggucugggUGGGAugcgGCGCCAGCUCGccccgcgCGUCCc -3'
miRNA:   3'- gGCG--------GCCCU----UGCGGUCGGGCa------GCGGG- -5'
23756 5' -63.3 NC_005261.1 + 50458 0.66 0.583411
Target:  5'- gCGCCGGcaggagaccacgaGGACGCUcgcguccgcggcGGCCCccagcgccUCGCCCa -3'
miRNA:   3'- gGCGGCC-------------CUUGCGG------------UCGGGc-------AGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.