miRNA display CGI


Results 21 - 40 of 872 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 63227 0.66 0.574326
Target:  5'- cGGUCCuugGCCgACAC-CUC-CGCcGGCGUg -3'
miRNA:   3'- -CCGGG---CGGgUGUGcGAGuGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 5093 0.66 0.574326
Target:  5'- cGGCCaccauGCgCCACA-GCUC-CGCcagcucGGCGCg -3'
miRNA:   3'- -CCGGg----CG-GGUGUgCGAGuGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 39221 0.66 0.613096
Target:  5'- cGCCaugGCCCuCGCGCgCGC-CGGCGa -3'
miRNA:   3'- cCGGg--CGGGuGUGCGaGUGcGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 70231 0.66 0.574326
Target:  5'- uGGCgCCGCgCGCAaaCUCGaccuCGGCGCg -3'
miRNA:   3'- -CCG-GGCGgGUGUgcGAGUgc--GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 77337 0.66 0.574326
Target:  5'- cGGCgCCGCCCcC-CGCcaugaGCGCaGUGCa -3'
miRNA:   3'- -CCG-GGCGGGuGuGCGag---UGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 47746 0.66 0.564712
Target:  5'- aGCCCGCUgGCGuCGUcCACcccgaGGCGCg -3'
miRNA:   3'- cCGGGCGGgUGU-GCGaGUGcg---CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 35922 0.66 0.574326
Target:  5'- cGGcCCCGCgCCGCA-GCccaGCG-GGCGCc -3'
miRNA:   3'- -CC-GGGCG-GGUGUgCGag-UGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 67496 0.66 0.574326
Target:  5'- --nCCGCCagcCGCGCGUaguaggccagcgUCGcCGCGGCGCc -3'
miRNA:   3'- ccgGGCGG---GUGUGCG------------AGU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135507 0.66 0.574326
Target:  5'- uGGCCUcaGCCgACGagUGcCUgACGUGGUGCa -3'
miRNA:   3'- -CCGGG--CGGgUGU--GC-GAgUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 130137 0.66 0.581078
Target:  5'- cGCgCCGUCCGCcgaGCGCacCACguccuccaccgucaGCGGCGCc -3'
miRNA:   3'- cCG-GGCGGGUG---UGCGa-GUG--------------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 89165 0.66 0.583011
Target:  5'- aGGUcaaCUGCaCCGCGgacaaccuggagcCGCUCGCG-GGCGCc -3'
miRNA:   3'- -CCG---GGCG-GGUGU-------------GCGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 92752 0.66 0.564712
Target:  5'- aGCgCCGCCCGCGcCGCUCggAC-CGG-GCc -3'
miRNA:   3'- cCG-GGCGGGUGU-GCGAG--UGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 51408 0.66 0.583011
Target:  5'- cGGa--GCCCGCGCGCcCAcCGCcugcugggccccgGGCGCg -3'
miRNA:   3'- -CCgggCGGGUGUGCGaGU-GCG-------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 16281 0.66 0.564712
Target:  5'- cGGCUCGCCCGgggggGCGCcgUCGggcccaGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUg----UGCG--AGUg-----CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 100901 0.66 0.564712
Target:  5'- cGGCCuCGCCgCGCAcCGC-CGCGa-GCGUc -3'
miRNA:   3'- -CCGG-GCGG-GUGU-GCGaGUGCgcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 106384 0.66 0.564712
Target:  5'- --gCCGUugCCGC-CGCUgucggcgacaucCGCGCGGCGCu -3'
miRNA:   3'- ccgGGCG--GGUGuGCGA------------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 78636 0.66 0.574326
Target:  5'- aGGUCCGCCga---GUUCGCGCGaGCGa -3'
miRNA:   3'- -CCGGGCGGgugugCGAGUGCGC-CGCg -5'
23757 3' -63.1 NC_005261.1 + 641 0.66 0.574326
Target:  5'- cGGCggCCGCCa--GCGC-CGCGUccccGGCGCc -3'
miRNA:   3'- -CCG--GGCGGgugUGCGaGUGCG----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 23165 0.66 0.564712
Target:  5'- gGGCCCGgCagGCGCGCcgggggCGacaGCGaGCGCg -3'
miRNA:   3'- -CCGGGCgGg-UGUGCGa-----GUg--CGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 48016 0.66 0.574326
Target:  5'- cGcCCCGCCgGCagagcaggGCGaggagCACGCGcGCGCg -3'
miRNA:   3'- cC-GGGCGGgUG--------UGCga---GUGCGC-CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.