miRNA display CGI


Results 1 - 20 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 100725 0.85 0.034903
Target:  5'- cGGCCgCGCCgCGCGCGCgCGCgGCGGCGCg -3'
miRNA:   3'- -CCGG-GCGG-GUGUGCGaGUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 63540 0.85 0.035823
Target:  5'- cGGCCUGCCCGCGCGCcgugCcCGCuGGCGCg -3'
miRNA:   3'- -CCGGGCGGGUGUGCGa---GuGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 76219 0.85 0.037736
Target:  5'- cGCCUGCgCCGCGCGCUUgacgagACGCGGCGCc -3'
miRNA:   3'- cCGGGCG-GGUGUGCGAG------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 133334 0.83 0.046436
Target:  5'- -uCCUGCCgGCACGCgCGCGCGGCGCu -3'
miRNA:   3'- ccGGGCGGgUGUGCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 11939 0.83 0.048901
Target:  5'- cGGCCCGCgCCGCgGCgGCUCGCcCGGCGCg -3'
miRNA:   3'- -CCGGGCG-GGUG-UG-CGAGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 102367 0.83 0.050181
Target:  5'- aGCgCGCCUcaACGCGCUCcaGCGCGGCGCg -3'
miRNA:   3'- cCGgGCGGG--UGUGCGAG--UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 34366 0.83 0.051493
Target:  5'- gGGCgCCGCgcggcgCCGCGCGCagACGCGGCGCa -3'
miRNA:   3'- -CCG-GGCG------GGUGUGCGagUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 67658 0.83 0.052838
Target:  5'- cGCCCGUCCGCGCGCg-GCGCcaGGCGCg -3'
miRNA:   3'- cCGGGCGGGUGUGCGagUGCG--CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 63012 0.83 0.054218
Target:  5'- cGGCCgCGCCCGCGCGggCGC-CGGCGCc -3'
miRNA:   3'- -CCGG-GCGGGUGUGCgaGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 62849 0.82 0.055632
Target:  5'- uGGCgCGCCC-CGCGC-CACGCGGCGg -3'
miRNA:   3'- -CCGgGCGGGuGUGCGaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 91461 0.82 0.05857
Target:  5'- cGGcCCCGCCCGCGC-CUCccaGCGGCGCc -3'
miRNA:   3'- -CC-GGGCGGGUGUGcGAGug-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 35440 0.82 0.060094
Target:  5'- cGCCCGCCCGCccCGCgggucuagGCGCGGCGCg -3'
miRNA:   3'- cCGGGCGGGUGu-GCGag------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 19731 0.81 0.064902
Target:  5'- aGGCCCcgaucuugaGCaCCACGCGCUCccGCGCGGgCGCg -3'
miRNA:   3'- -CCGGG---------CG-GGUGUGCGAG--UGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 107869 0.81 0.064902
Target:  5'- cGG-CCGCCCGCGCGCUCGCGCc-CGCg -3'
miRNA:   3'- -CCgGGCGGGUGUGCGAGUGCGccGCG- -5'
23757 3' -63.1 NC_005261.1 + 95727 0.81 0.06831
Target:  5'- gGGCCCGCC---GCGCUCA-GCGGCGCc -3'
miRNA:   3'- -CCGGGCGGgugUGCGAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 92580 0.81 0.070079
Target:  5'- cGCgCGCCCACGCGCgagCGCagccgcucGCGGCGCg -3'
miRNA:   3'- cCGgGCGGGUGUGCGa--GUG--------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 95200 0.81 0.070079
Target:  5'- gGGaCCCGCgCCGCcCGCcCGCGCGGUGCg -3'
miRNA:   3'- -CC-GGGCG-GGUGuGCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 82562 0.81 0.070079
Target:  5'- cGGCCgCGCgCCGCAgcaGCUCGCGCaGCGCg -3'
miRNA:   3'- -CCGG-GCG-GGUGUg--CGAGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 67944 0.81 0.070079
Target:  5'- -cCCCGCCgGCcCGCUCGCGCGGcCGCc -3'
miRNA:   3'- ccGGGCGGgUGuGCGAGUGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 93147 0.81 0.070079
Target:  5'- gGGUCCGUCUGCA-GCUCgcACGCGGCGCa -3'
miRNA:   3'- -CCGGGCGGGUGUgCGAG--UGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.