miRNA display CGI


Results 21 - 40 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 104291 0.8 0.075652
Target:  5'- gGGCCUcgcagGCCCGCGCGCgcucaaagagCGCGCGGaCGCg -3'
miRNA:   3'- -CCGGG-----CGGGUGUGCGa---------GUGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 67457 0.8 0.079399
Target:  5'- cGGUCCGCCCGCACGCcCGCguacaggaagcccGCGGcCGCc -3'
miRNA:   3'- -CCGGGCGGGUGUGCGaGUG-------------CGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 36867 0.8 0.079399
Target:  5'- cGCCCGcCCCGCACGCUggccCGCGCccuuccucgccaaGGCGCg -3'
miRNA:   3'- cCGGGC-GGGUGUGCGA----GUGCG-------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135429 0.8 0.081649
Target:  5'- aGGUgCGCUCGCACGCcgccCAgGCGGCGCg -3'
miRNA:   3'- -CCGgGCGGGUGUGCGa---GUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 47926 0.8 0.081649
Target:  5'- cGGCCgucaCGuCCCGCGCGCcgCGCGCGaGCGCg -3'
miRNA:   3'- -CCGG----GC-GGGUGUGCGa-GUGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 59092 0.8 0.081649
Target:  5'- cGCCgCGCCCuCGCGCUCGCagGCGcGCGCg -3'
miRNA:   3'- cCGG-GCGGGuGUGCGAGUG--CGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 58266 0.8 0.083747
Target:  5'- cGCCgCGCUCGcCGCGCUCACGgggcCGGCGCg -3'
miRNA:   3'- cCGG-GCGGGU-GUGCGAGUGC----GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 11887 0.8 0.085896
Target:  5'- aGCCCGCCCGCACGCgcgccCGcCGCGG-GCc -3'
miRNA:   3'- cCGGGCGGGUGUGCGa----GU-GCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 107756 0.8 0.088098
Target:  5'- gGGCCaCGCCCcaGCGCUCGC-UGGCGCg -3'
miRNA:   3'- -CCGG-GCGGGugUGCGAGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 118565 0.79 0.090354
Target:  5'- cGCCgUGCCCGCGCGCgCG-GCGGCGCg -3'
miRNA:   3'- cCGG-GCGGGUGUGCGaGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 30358 0.79 0.090354
Target:  5'- cGGCCCugaagGCCgGCGCGCcgggCGcCGCGGCGCg -3'
miRNA:   3'- -CCGGG-----CGGgUGUGCGa---GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2125 0.79 0.090354
Target:  5'- uGCgCGCCgaGCGCGCUCACGUccGGCGCg -3'
miRNA:   3'- cCGgGCGGg-UGUGCGAGUGCG--CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 105113 0.79 0.090354
Target:  5'- gGGCuuGCCCGCGCGggCGCGggccgcCGGCGCg -3'
miRNA:   3'- -CCGggCGGGUGUGCgaGUGC------GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 37219 0.79 0.092664
Target:  5'- uGGCU--CCCGCGgGCUUGCGCGGCGCg -3'
miRNA:   3'- -CCGGgcGGGUGUgCGAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 39544 0.79 0.09503
Target:  5'- cGGCCgccaGCCC-CGCGCgCGCGCGGCGg -3'
miRNA:   3'- -CCGGg---CGGGuGUGCGaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 54011 0.79 0.09672
Target:  5'- aGGCgCCGCCgcgagcgcuucgcgCACGCGCUCcguguaccgcGCGCGGUGCg -3'
miRNA:   3'- -CCG-GGCGG--------------GUGUGCGAG----------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 86888 0.79 0.097453
Target:  5'- uGGCCgCGCCCugGucCGC--GCGCGGCGCg -3'
miRNA:   3'- -CCGG-GCGGGugU--GCGagUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 105913 0.79 0.099935
Target:  5'- cGGgCCGCUCGCGCGCgccCACGCcGCGCc -3'
miRNA:   3'- -CCgGGCGGGUGUGCGa--GUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 99515 0.79 0.101707
Target:  5'- gGGCCCGCCCguuGCgugcaccgucgaggGCGCgucCAgGCGGCGCg -3'
miRNA:   3'- -CCGGGCGGG---UG--------------UGCGa--GUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 126607 0.79 0.102476
Target:  5'- aGGCCCGCgUAC-CGCUCuuccCGCGcGCGCa -3'
miRNA:   3'- -CCGGGCGgGUGuGCGAGu---GCGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.