miRNA display CGI


Results 41 - 60 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 31623 0.66 0.59366
Target:  5'- uGCUCGCgacgcgggaCCugGC-CUUcCGCGGCGCg -3'
miRNA:   3'- cCGGGCG---------GGugUGcGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 124073 0.66 0.59366
Target:  5'- cGGCCgacugcaGCCCG-GCGCcCGCGUaGCGCg -3'
miRNA:   3'- -CCGGg------CGGGUgUGCGaGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 98569 0.66 0.59366
Target:  5'- gGGCggCCGUCCuccGCGgGCUCgggcgaguAgGCGGCGCc -3'
miRNA:   3'- -CCG--GGCGGG---UGUgCGAG--------UgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 83238 0.66 0.59366
Target:  5'- cGCCgGCCCACGgacuCGCcCugguuCGCGGUGa -3'
miRNA:   3'- cCGGgCGGGUGU----GCGaGu----GCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 32722 0.66 0.59366
Target:  5'- -cCCCGCCCcCGucuccgucCGCUCugcGCGCGGCccGCc -3'
miRNA:   3'- ccGGGCGGGuGU--------GCGAG---UGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 124112 0.66 0.59366
Target:  5'- gGGCCgGCaCCGCAgucaGCaUCACGCGcagcucGUGCc -3'
miRNA:   3'- -CCGGgCG-GGUGUg---CG-AGUGCGC------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 121164 0.66 0.59366
Target:  5'- aGGgUUGCCCGgGCGCUCgguGCaCGGgGCc -3'
miRNA:   3'- -CCgGGCGGGUgUGCGAG---UGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 115559 0.66 0.59366
Target:  5'- aGGUCCGUguggcagCACACGa--ACGCGGCGa -3'
miRNA:   3'- -CCGGGCGg------GUGUGCgagUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 2994 0.66 0.59366
Target:  5'- cGGCCUggcgGCCCgGCGCcgggGCUCcCGCGG-GCc -3'
miRNA:   3'- -CCGGG----CGGG-UGUG----CGAGuGCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 65280 0.66 0.59366
Target:  5'- uGCCgGUCCACGCucaGCUCAaaGCcGCGCc -3'
miRNA:   3'- cCGGgCGGGUGUG---CGAGUg-CGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 59485 0.66 0.59366
Target:  5'- cGGCgCGgCCGcCGCGC-CA-GCGGCGg -3'
miRNA:   3'- -CCGgGCgGGU-GUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 21127 0.66 0.59366
Target:  5'- uGCCCaaGCCCcCACGagCGCGUGGUGa -3'
miRNA:   3'- cCGGG--CGGGuGUGCgaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 55705 0.66 0.59269
Target:  5'- cGGCCgcuugggCGgCCACGCGUgucucuaugUCGCG-GGCGUg -3'
miRNA:   3'- -CCGG-------GCgGGUGUGCG---------AGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 52972 0.66 0.59269
Target:  5'- cGCCggugcggCGCCgGCAgGCggGgGCGGCGCc -3'
miRNA:   3'- cCGG-------GCGGgUGUgCGagUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 112938 0.66 0.59269
Target:  5'- cGGCgCGCUCGCcuucgacuucgccGCGCUgucCACGgCGGcCGCc -3'
miRNA:   3'- -CCGgGCGGGUG-------------UGCGA---GUGC-GCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 125620 0.66 0.590752
Target:  5'- cGCCCGCCCuuagaaguccagcaGCugGUUgAgGCGGUcccccaGCa -3'
miRNA:   3'- cCGGGCGGG--------------UGugCGAgUgCGCCG------CG- -5'
23757 3' -63.1 NC_005261.1 + 53736 0.66 0.587847
Target:  5'- cGCCCGCacgggcgagcacgugCCGgacgUACGC-CGCGCGGCa- -3'
miRNA:   3'- cCGGGCG---------------GGU----GUGCGaGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 72485 0.66 0.583977
Target:  5'- cGGCCaGCgCCAggaGCGC-CGCGCgaagcgGGCGCc -3'
miRNA:   3'- -CCGGgCG-GGUg--UGCGaGUGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 99655 0.66 0.583977
Target:  5'- uGCgCGCCaGCACGCUgaccgucgucagCGCGCugcccgggaugaGGCGCg -3'
miRNA:   3'- cCGgGCGGgUGUGCGA------------GUGCG------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 5909 0.66 0.583977
Target:  5'- cGGCCgGCCgGCugGCUagcucgcuCGaCGGCa- -3'
miRNA:   3'- -CCGGgCGGgUGugCGAgu------GC-GCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.