miRNA display CGI


Results 1 - 20 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 125 0.74 0.212899
Target:  5'- cGGCgCCGcCCCugGUGCUCGCGgGGCugGCa -3'
miRNA:   3'- -CCG-GGC-GGGugUGCGAGUGCgCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 345 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 641 0.66 0.574326
Target:  5'- cGGCggCCGCCa--GCGC-CGCGUccccGGCGCc -3'
miRNA:   3'- -CCG--GGCGGgugUGCGaGUGCG----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 678 0.71 0.299694
Target:  5'- uGGCCC-UCCGCggACGCUC-CGCaucGGCGCc -3'
miRNA:   3'- -CCGGGcGGGUG--UGCGAGuGCG---CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1171 0.76 0.146443
Target:  5'- cGCCgGCCCGCGcCGCggCcggggccggggccggGCGCGGCGCg -3'
miRNA:   3'- cCGGgCGGGUGU-GCGa-G---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1376 0.68 0.489756
Target:  5'- uGGUCCGCguCC-CAgGC-CACGCcgGGCGCc -3'
miRNA:   3'- -CCGGGCG--GGuGUgCGaGUGCG--CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1431 0.69 0.403239
Target:  5'- cGCCCGCCUccaGCACcaGCg---GCGGCGCc -3'
miRNA:   3'- cCGGGCGGG---UGUG--CGagugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1539 0.74 0.221018
Target:  5'- cGCgCCGCCCGCAgGCcagguacaccggcCGCaGCGGCGCg -3'
miRNA:   3'- cCG-GGCGGGUGUgCGa------------GUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1578 0.68 0.480699
Target:  5'- cGCCgaGCCCcCA-GCggUugGCGGCGCg -3'
miRNA:   3'- cCGGg-CGGGuGUgCGa-GugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1636 0.68 0.445324
Target:  5'- cGGCUC-CCCGagccccagcgcCGCGCUCuGCGCGGC-Ca -3'
miRNA:   3'- -CCGGGcGGGU-----------GUGCGAG-UGCGCCGcG- -5'
23757 3' -63.1 NC_005261.1 + 1682 0.74 0.223088
Target:  5'- cGCCCGUCgagccgcggcagCACGCGCugccgguacUCGCGCGGCGg -3'
miRNA:   3'- cCGGGCGG------------GUGUGCG---------AGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 1890 0.78 0.106136
Target:  5'- cGGCgCGCgCCAgCGCGCgccgcucaggccagCGCGCGGCGCa -3'
miRNA:   3'- -CCGgGCG-GGU-GUGCGa-------------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1932 0.68 0.480699
Target:  5'- --aCUGCgCCGCGgGCagCAcCGCGGCGCg -3'
miRNA:   3'- ccgGGCG-GGUGUgCGa-GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2125 0.79 0.090354
Target:  5'- uGCgCGCCgaGCGCGCUCACGUccGGCGCg -3'
miRNA:   3'- cCGgGCGGg-UGUGCGAGUGCG--CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2162 0.68 0.471723
Target:  5'- aGGaCCCgGCCCAgGCGU--GCGaguCGGCGCu -3'
miRNA:   3'- -CC-GGG-CGGGUgUGCGagUGC---GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2233 0.71 0.332012
Target:  5'- aGCCCGCCgCGCACcggcggccacucagGC-CGC-CGGCGCu -3'
miRNA:   3'- cCGGGCGG-GUGUG--------------CGaGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2369 0.72 0.268043
Target:  5'- aGGCCaCGCgCCGC-CGCa---GCGGCGCg -3'
miRNA:   3'- -CCGG-GCG-GGUGuGCGagugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2404 0.77 0.131439
Target:  5'- aGCgCGCCCGCGgGCccCGCGCGGCGg -3'
miRNA:   3'- cCGgGCGGGUGUgCGa-GUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 2540 0.67 0.536148
Target:  5'- aGGCCgccaGCgCCGCgGCGCUgGgCGCgGGCGUg -3'
miRNA:   3'- -CCGGg---CG-GGUG-UGCGAgU-GCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2681 0.68 0.462834
Target:  5'- gGGaCCCGgCgGCGCGCcggcuUUugGCcGGCGCc -3'
miRNA:   3'- -CC-GGGCgGgUGUGCG-----AGugCG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.