miRNA display CGI


Results 1 - 20 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 138016 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 137808 0.74 0.212899
Target:  5'- cGGCgCCGcCCCugGUGCUCGCGgGGCugGCa -3'
miRNA:   3'- -CCG-GGC-GGGugUGCGAGUGCgCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 136434 0.71 0.306361
Target:  5'- aGGCCCcCUCGCGgGCgucgcaggggCACGCGGCaGCc -3'
miRNA:   3'- -CCGGGcGGGUGUgCGa---------GUGCGCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 135746 0.7 0.348736
Target:  5'- uGGCgCGCCU-CA-GC-CGCGCGGUGCg -3'
miRNA:   3'- -CCGgGCGGGuGUgCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135668 0.7 0.348736
Target:  5'- cGGCCCucGCUCGaggagcucUGCGC-CGCGCGGCGg -3'
miRNA:   3'- -CCGGG--CGGGU--------GUGCGaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 135507 0.66 0.574326
Target:  5'- uGGCCUcaGCCgACGagUGcCUgACGUGGUGCa -3'
miRNA:   3'- -CCGGG--CGGgUGU--GC-GAgUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135429 0.8 0.081649
Target:  5'- aGGUgCGCUCGCACGCcgccCAgGCGGCGCg -3'
miRNA:   3'- -CCGgGCGGGUGUGCGa---GUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135163 0.72 0.292491
Target:  5'- cGCCCGCUCGaucgggagcucgcUGCgGCUCGCGCGGaGCa -3'
miRNA:   3'- cCGGGCGGGU-------------GUG-CGAGUGCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 135065 0.73 0.244709
Target:  5'- cGGCCCGCCgCuuuccggcgGCGgGCUCGCGgccCGGCGg -3'
miRNA:   3'- -CCGGGCGG-G---------UGUgCGAGUGC---GCCGCg -5'
23757 3' -63.1 NC_005261.1 + 135014 0.76 0.159864
Target:  5'- cGGCggGCCCGCACGCggcCGCGGCGg -3'
miRNA:   3'- -CCGggCGGGUGUGCGaguGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 134426 0.7 0.387124
Target:  5'- --gCUGCuCCACGCuGCUCGCGgGGCuGCu -3'
miRNA:   3'- ccgGGCG-GGUGUG-CGAGUGCgCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 134354 0.69 0.395128
Target:  5'- -cCCCGCgCCGcCGCGCgggGgGCGGCGCc -3'
miRNA:   3'- ccGGGCG-GGU-GUGCGag-UgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 134238 0.68 0.454033
Target:  5'- cGGCgUgGCgCACGCGCccuGCGCGGcCGCg -3'
miRNA:   3'- -CCG-GgCGgGUGUGCGag-UGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 134198 0.67 0.508103
Target:  5'- uGGCgCgGCUCgGCGCGCggguCGCGGCGg -3'
miRNA:   3'- -CCG-GgCGGG-UGUGCGagu-GCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 134144 0.66 0.59366
Target:  5'- uGGgCUGCgCCugGCGC-CACcCGGgGCu -3'
miRNA:   3'- -CCgGGCG-GGugUGCGaGUGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 134099 0.66 0.603368
Target:  5'- cGGCgCGCCggCGCGCGCUCGC-CGcCGa -3'
miRNA:   3'- -CCGgGCGG--GUGUGCGAGUGcGCcGCg -5'
23757 3' -63.1 NC_005261.1 + 134058 0.77 0.131439
Target:  5'- cGGCCCGUaCACgaaGCUCGCGCGGCu- -3'
miRNA:   3'- -CCGGGCGgGUGug-CGAGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 133913 0.7 0.344316
Target:  5'- uGGCCUGgCUGCuguacgucGCGUUCguguaccugcgccagGCGCGGCGCa -3'
miRNA:   3'- -CCGGGCgGGUG--------UGCGAG---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 133870 0.72 0.280368
Target:  5'- uGCCgCGCCUACcuguggucuGCGCaagCcCGCGGCGCg -3'
miRNA:   3'- cCGG-GCGGGUG---------UGCGa--GuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 133799 0.7 0.341391
Target:  5'- -uCCCGCCCGgGCuGCUCgacgGCGacgaGGCGCu -3'
miRNA:   3'- ccGGGCGGGUgUG-CGAG----UGCg---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.