miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 37246 0.69 0.836358
Target:  5'- cGCGUGGACaGCGC-GGAG-ACcauccUGGCCg -3'
miRNA:   3'- -UGUACCUG-CGCGaCUUCaUGc----ACCGG- -5'
23758 3' -54 NC_005261.1 + 37873 0.67 0.92694
Target:  5'- cGCcUGGcggcGCGUGCUGGAGccCGagcUGGCCa -3'
miRNA:   3'- -UGuACC----UGCGCGACUUCauGC---ACCGG- -5'
23758 3' -54 NC_005261.1 + 37989 0.75 0.538571
Target:  5'- cGCGUGGACGCGCUacgcggcgcccGAGG-ACGUcaaGGUCg -3'
miRNA:   3'- -UGUACCUGCGCGA-----------CUUCaUGCA---CCGG- -5'
23758 3' -54 NC_005261.1 + 39783 0.68 0.890003
Target:  5'- ---aGGACGuCGCcgGggGgcgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGC-GCGa-CuuCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 43453 0.7 0.801322
Target:  5'- cGCcUGGACGUcgccgggcggguGCUGGcggAGUGCGaGGCCu -3'
miRNA:   3'- -UGuACCUGCG------------CGACU---UCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 44264 0.66 0.946634
Target:  5'- ---cGcGGCGCGCgGggGgGCGgGGCCc -3'
miRNA:   3'- uguaC-CUGCGCGaCuuCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 44965 0.72 0.673065
Target:  5'- uGCG-GGACGCGCgcGAGGgcccggGCG-GGCCg -3'
miRNA:   3'- -UGUaCCUGCGCGa-CUUCa-----UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 45120 0.73 0.652289
Target:  5'- gGCAcGGGCGCGCUGAugcugACGcucgacGGCCg -3'
miRNA:   3'- -UGUaCCUGCGCGACUuca--UGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 45465 0.74 0.589829
Target:  5'- uACGUGGGCGCcacgcgcguGCUGAAcacggccauGUGCaUGGCCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUU---------CAUGcACCGG- -5'
23758 3' -54 NC_005261.1 + 47073 0.7 0.801322
Target:  5'- cGCGUGGuACGCGUgcacgccGAAG-GCG-GGCCa -3'
miRNA:   3'- -UGUACC-UGCGCGa------CUUCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 47578 0.66 0.94619
Target:  5'- cGCAUGGcgcagagccgcgcGCGCGCgagGGAGccgcccccUGCGggggcGGCCg -3'
miRNA:   3'- -UGUACC-------------UGCGCGa--CUUC--------AUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 48123 0.69 0.860643
Target:  5'- gGCAUGGcGCGCGCgggaaagaggGggGaGgGUGGCg -3'
miRNA:   3'- -UGUACC-UGCGCGa---------CuuCaUgCACCGg -5'
23758 3' -54 NC_005261.1 + 49361 0.67 0.92694
Target:  5'- cGCGUGGAgGaUGUUGAGGcugucgcucGCGcUGGCCa -3'
miRNA:   3'- -UGUACCUgC-GCGACUUCa--------UGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 49569 0.66 0.955018
Target:  5'- aGCAUGGGCGUgaacacggGCUcGggGcGCGcGGCg -3'
miRNA:   3'- -UGUACCUGCG--------CGA-CuuCaUGCaCCGg -5'
23758 3' -54 NC_005261.1 + 50374 0.66 0.955018
Target:  5'- cACGUaGcuccGCGCGUcGAAGUACGUcgcgaaGGCCg -3'
miRNA:   3'- -UGUAcC----UGCGCGaCUUCAUGCA------CCGG- -5'
23758 3' -54 NC_005261.1 + 51002 0.69 0.844656
Target:  5'- cGCGUGGGCGCgGCgGGAGcucgGCGaGcGCCa -3'
miRNA:   3'- -UGUACCUGCG-CGaCUUCa---UGCaC-CGG- -5'
23758 3' -54 NC_005261.1 + 51351 0.66 0.94208
Target:  5'- uGCAccgcUGGGCuguccgGCGC-GGAGUACGcgcaGGCCg -3'
miRNA:   3'- -UGU----ACCUG------CGCGaCUUCAUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 53870 0.66 0.946634
Target:  5'- aGCGcGGcgcGCGCGCUGucGAGUcgaaGCG-GGCCc -3'
miRNA:   3'- -UGUaCC---UGCGCGAC--UUCA----UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 54329 0.67 0.932234
Target:  5'- gGCGUGGccgaGCGCGUacAGGU-CGaUGGCCa -3'
miRNA:   3'- -UGUACC----UGCGCGacUUCAuGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 55293 0.7 0.773347
Target:  5'- ---cGGGgGCGCUGAagagccGGUGCGgggGGUCa -3'
miRNA:   3'- uguaCCUgCGCGACU------UCAUGCa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.