miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 3413 0.67 0.915608
Target:  5'- ----cGGCGgGCUGAAGaGCGcgcgGGCCa -3'
miRNA:   3'- uguacCUGCgCGACUUCaUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 5222 0.66 0.94208
Target:  5'- ---cGGACuCGaUGAGGUcguacaggucgaGCGUGGCCg -3'
miRNA:   3'- uguaCCUGcGCgACUUCA------------UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 12327 0.66 0.946634
Target:  5'- ---cGGGCGCGCgcuuGGccgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGCGacu-UCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 13679 0.66 0.94208
Target:  5'- gGCGcgGGGCGCGCgggcgUGggGcgggGCG-GGCUg -3'
miRNA:   3'- -UGUa-CCUGCGCG-----ACuuCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 14963 0.69 0.844656
Target:  5'- ---cGGGCGUGcCUGggGcgacUGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGC-GACuuC----AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 15283 0.67 0.915608
Target:  5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3'
miRNA:   3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 15996 0.67 0.932234
Target:  5'- cCcgGGcaGCGCGCUGuAGUugACGUuGCCg -3'
miRNA:   3'- uGuaCC--UGCGCGACuUCA--UGCAcCGG- -5'
23758 3' -54 NC_005261.1 + 16177 0.67 0.909571
Target:  5'- gGCGcGGGCGUgGCgGggGUggGCGggGGCCg -3'
miRNA:   3'- -UGUaCCUGCG-CGaCuuCA--UGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 23623 0.66 0.950946
Target:  5'- uGCcgGGGCGCgGCgGggGU-CGggcGGCUg -3'
miRNA:   3'- -UGuaCCUGCG-CGaCuuCAuGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 27365 0.67 0.921963
Target:  5'- ---cGGACcgGCGCgaggccggugggcagGggGUACGcGGCCa -3'
miRNA:   3'- uguaCCUG--CGCGa--------------CuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 28631 0.73 0.631445
Target:  5'- cGCAUGGugGcCGCgggGGAGagugACGaGGCCg -3'
miRNA:   3'- -UGUACCugC-GCGa--CUUCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 28836 0.69 0.836358
Target:  5'- ---cGGcCGCgGCUGAGGcggccguCGUGGCCg -3'
miRNA:   3'- uguaCCuGCG-CGACUUCau-----GCACCGG- -5'
23758 3' -54 NC_005261.1 + 29462 0.66 0.93728
Target:  5'- ---gGGACGCGggGAagcAGUACGcGGCg -3'
miRNA:   3'- uguaCCUGCGCgaCU---UCAUGCaCCGg -5'
23758 3' -54 NC_005261.1 + 29684 0.69 0.852753
Target:  5'- -uGUGGGCGCuGCcgcacgUGgcGgccUGCGUGGCCa -3'
miRNA:   3'- ugUACCUGCG-CG------ACuuC---AUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 30214 0.68 0.890003
Target:  5'- ---cGGcCGCGCUGgcGgcgcgaacCGUGGCCc -3'
miRNA:   3'- uguaCCuGCGCGACuuCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 32912 0.69 0.836358
Target:  5'- ---gGGGCGCGCgUGggGgGCGgcgGGCg -3'
miRNA:   3'- uguaCCUGCGCG-ACuuCaUGCa--CCGg -5'
23758 3' -54 NC_005261.1 + 33365 0.67 0.90329
Target:  5'- cGCcgGGcCGCGCcGGGcUGCG-GGCCg -3'
miRNA:   3'- -UGuaCCuGCGCGaCUUcAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 33897 0.68 0.895432
Target:  5'- cACcgGGGCGCGCguauaaaGCGgGGCCg -3'
miRNA:   3'- -UGuaCCUGCGCGacuuca-UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 34677 0.67 0.909571
Target:  5'- -uGUGGcaGCGCGCUGcgugACGgugGGCCc -3'
miRNA:   3'- ugUACC--UGCGCGACuucaUGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 34907 0.67 0.909571
Target:  5'- ---cGGACGCGgaGGucGGgGCGcGGCCa -3'
miRNA:   3'- uguaCCUGCGCgaCU--UCaUGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.