miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 112356 0.82 0.214911
Target:  5'- uCAUGGGCGCGCUGAAGcugcuggacuCGaUGGCCa -3'
miRNA:   3'- uGUACCUGCGCGACUUCau--------GC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 89096 0.77 0.396838
Target:  5'- gGCccGGGCGCGCUGgcGcgcGCGUGGCa -3'
miRNA:   3'- -UGuaCCUGCGCGACuuCa--UGCACCGg -5'
23758 3' -54 NC_005261.1 + 119570 0.77 0.440602
Target:  5'- -aGUGGAUGCGCUGcgagcgcGAGacCGUGGCCg -3'
miRNA:   3'- ugUACCUGCGCGAC-------UUCauGCACCGG- -5'
23758 3' -54 NC_005261.1 + 56476 0.76 0.454538
Target:  5'- uCAUGGAgGCGCUGGAGUcuaugcgcgccucagGCGcguuugcgcaagUGGCCg -3'
miRNA:   3'- uGUACCUgCGCGACUUCA---------------UGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 37989 0.75 0.538571
Target:  5'- cGCGUGGACGCGCUacgcggcgcccGAGG-ACGUcaaGGUCg -3'
miRNA:   3'- -UGUACCUGCGCGA-----------CUUCaUGCA---CCGG- -5'
23758 3' -54 NC_005261.1 + 135496 0.75 0.548718
Target:  5'- -gAUGGACGCGCUGGccucagccgacgAGUgccugACGUGGUg -3'
miRNA:   3'- ugUACCUGCGCGACU------------UCA-----UGCACCGg -5'
23758 3' -54 NC_005261.1 + 132940 0.74 0.579486
Target:  5'- uACGUGGuccccgaGCGCUGcgccgACGUGGCCg -3'
miRNA:   3'- -UGUACCug-----CGCGACuuca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 45465 0.74 0.589829
Target:  5'- uACGUGGGCGCcacgcgcguGCUGAAcacggccauGUGCaUGGCCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUU---------CAUGcACCGG- -5'
23758 3' -54 NC_005261.1 + 28631 0.73 0.631445
Target:  5'- cGCAUGGugGcCGCgggGGAGagugACGaGGCCg -3'
miRNA:   3'- -UGUACCugC-GCGa--CUUCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 110238 0.73 0.641871
Target:  5'- aGCGUGGGCgGCGCggcgcccggGggGcUGCG-GGCCu -3'
miRNA:   3'- -UGUACCUG-CGCGa--------CuuC-AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 45120 0.73 0.652289
Target:  5'- gGCAcGGGCGCGCUGAugcugACGcucgacGGCCg -3'
miRNA:   3'- -UGUaCCUGCGCGACUuca--UGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 44965 0.72 0.673065
Target:  5'- uGCG-GGACGCGCgcGAGGgcccggGCG-GGCCg -3'
miRNA:   3'- -UGUaCCUGCGCGa-CUUCa-----UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 69538 0.72 0.673065
Target:  5'- gGCGcUGGcgcGCGCGCUGggG-ACGgcGGCCc -3'
miRNA:   3'- -UGU-ACC---UGCGCGACuuCaUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 124188 0.72 0.683406
Target:  5'- cGCGUggggGGACGCGUccgguggcgUGAAcUGCGUGGCUg -3'
miRNA:   3'- -UGUA----CCUGCGCG---------ACUUcAUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 76165 0.72 0.703947
Target:  5'- gACGccGugGCGCUGcAGUACGagcggGGCCu -3'
miRNA:   3'- -UGUacCugCGCGACuUCAUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 136607 0.71 0.734261
Target:  5'- aGCGUGGagcggcgcgcGCGCGCcGAGGgcgGCGggaaGGCCu -3'
miRNA:   3'- -UGUACC----------UGCGCGaCUUCa--UGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 131213 0.71 0.754027
Target:  5'- ----cGGCGCGCccgcGUACGUGGCCg -3'
miRNA:   3'- uguacCUGCGCGacuuCAUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 58867 0.71 0.754027
Target:  5'- -aGUGGAaGCGCUGggGagguccggGCG-GGCCu -3'
miRNA:   3'- ugUACCUgCGCGACuuCa-------UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 93431 0.71 0.754027
Target:  5'- ---cGcGAUGUGCuUGAGGgcCGUGGCCa -3'
miRNA:   3'- uguaC-CUGCGCG-ACUUCauGCACCGG- -5'
23758 3' -54 NC_005261.1 + 55293 0.7 0.773347
Target:  5'- ---cGGGgGCGCUGAagagccGGUGCGgggGGUCa -3'
miRNA:   3'- uguaCCUgCGCGACU------UCAUGCa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.