miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 83846 0.71 0.329743
Target:  5'- cGGGCcGCG-GCCCcGCuGGGCUGgGCc -3'
miRNA:   3'- uCCCGcUGCaCGGGaCG-CCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 110454 0.71 0.329743
Target:  5'- cGGGCGuuuGgGUGCCUggGCGGGCUGc-- -3'
miRNA:   3'- uCCCGC---UgCACGGGa-CGCCCGACacg -5'
23758 5' -62.6 NC_005261.1 + 23756 0.7 0.337014
Target:  5'- aGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 37359 0.7 0.337014
Target:  5'- cGGGCGGugcuCGccGCCCgagGCGGcGCUGUGg -3'
miRNA:   3'- uCCCGCU----GCa-CGGGa--CGCC-CGACACg -5'
23758 5' -62.6 NC_005261.1 + 17555 0.7 0.3444
Target:  5'- cGGGCccgccguucGGCGgugGCCUUGCGGGCgagcugGCa -3'
miRNA:   3'- uCCCG---------CUGCa--CGGGACGCCCGaca---CG- -5'
23758 5' -62.6 NC_005261.1 + 23813 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 23870 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 93676 0.7 0.3444
Target:  5'- cGGGCGGCG-GCgCCgGCGgGGCgccggcggGUGCc -3'
miRNA:   3'- uCCCGCUGCaCG-GGaCGC-CCGa-------CACG- -5'
23758 5' -62.6 NC_005261.1 + 133818 0.7 0.3444
Target:  5'- -cGGCGACGagGCgCUGCGcGGCcgcGUGCg -3'
miRNA:   3'- ucCCGCUGCa-CGgGACGC-CCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 120306 0.7 0.351903
Target:  5'- gAGGGCGGCGagGCUguCUGCGaGGCgcgcUGCg -3'
miRNA:   3'- -UCCCGCUGCa-CGG--GACGC-CCGac--ACG- -5'
23758 5' -62.6 NC_005261.1 + 109120 0.7 0.351903
Target:  5'- gAGGGCGGCgGUGUCgUGCGcGGCcccagGCa -3'
miRNA:   3'- -UCCCGCUG-CACGGgACGC-CCGaca--CG- -5'
23758 5' -62.6 NC_005261.1 + 21813 0.7 0.351903
Target:  5'- cGGGC--CGgGCCCgcgGCGGGCgcgcGUGCg -3'
miRNA:   3'- uCCCGcuGCaCGGGa--CGCCCGa---CACG- -5'
23758 5' -62.6 NC_005261.1 + 97700 0.7 0.35952
Target:  5'- cGGGGCGguggggagacgGCGggugGCCCggGCGGGCUaacgGCu -3'
miRNA:   3'- -UCCCGC-----------UGCa---CGGGa-CGCCCGAca--CG- -5'
23758 5' -62.6 NC_005261.1 + 104648 0.7 0.35952
Target:  5'- aGGaGGUGACGaacGCgCUgGCGGGCgUGUGCu -3'
miRNA:   3'- -UC-CCGCUGCa--CGgGA-CGCCCG-ACACG- -5'
23758 5' -62.6 NC_005261.1 + 13071 0.7 0.367252
Target:  5'- cGGGCG-CGUccgccgGCCCgucgGCGGGCg--GCg -3'
miRNA:   3'- uCCCGCuGCA------CGGGa---CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 107183 0.7 0.375097
Target:  5'- -cGGCGGCGUaGCCCUGCagccgcgcgaaGGCggcGUGCa -3'
miRNA:   3'- ucCCGCUGCA-CGGGACGc----------CCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 57828 0.69 0.383055
Target:  5'- aGGGGuCcACGUGCUCcGCGGGCgcgGgcgGCa -3'
miRNA:   3'- -UCCC-GcUGCACGGGaCGCCCGa--Ca--CG- -5'
23758 5' -62.6 NC_005261.1 + 33615 0.69 0.383055
Target:  5'- cGGGCGGCGggGCCC-GgGGGCgc-GCc -3'
miRNA:   3'- uCCCGCUGCa-CGGGaCgCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 55713 0.69 0.391124
Target:  5'- uGGGCGgccacGCGUGUCuCUaugucGCGGGC-GUGCu -3'
miRNA:   3'- uCCCGC-----UGCACGG-GA-----CGCCCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 68711 0.69 0.391124
Target:  5'- -cGGCGGCGccgGCCCUcacgcgGCGGGCgccgGCg -3'
miRNA:   3'- ucCCGCUGCa--CGGGA------CGCCCGaca-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.