miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 100813 0.67 0.495044
Target:  5'- aAGGGCG-CGUGCgCCUGCGccgcccaGGCcGggaGCu -3'
miRNA:   3'- -UCCCGCuGCACG-GGACGC-------CCGaCa--CG- -5'
23758 5' -62.6 NC_005261.1 + 76058 0.68 0.486725
Target:  5'- uGGcCGGCGggcGCCaccaggGCGGGCUGcUGCg -3'
miRNA:   3'- uCCcGCUGCa--CGGga----CGCCCGAC-ACG- -5'
23758 5' -62.6 NC_005261.1 + 60064 0.68 0.486725
Target:  5'- aAGaGCGGCGgccgGUCC-GCGGGCUGcguggGCa -3'
miRNA:   3'- -UCcCGCUGCa---CGGGaCGCCCGACa----CG- -5'
23758 5' -62.6 NC_005261.1 + 64494 0.68 0.484885
Target:  5'- cGGGUGGCGcgggugcucgggGCCC-GCGGGCg--GCu -3'
miRNA:   3'- uCCCGCUGCa-----------CGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 68855 0.68 0.47756
Target:  5'- cGGG-GACGccCUCUGcCGcGGCUGUGCg -3'
miRNA:   3'- uCCCgCUGCacGGGAC-GC-CCGACACG- -5'
23758 5' -62.6 NC_005261.1 + 38276 0.68 0.47756
Target:  5'- gGGGGCGGCugGUGCac-GCGGuGCUG-GCc -3'
miRNA:   3'- -UCCCGCUG--CACGggaCGCC-CGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 124206 0.68 0.47756
Target:  5'- -cGGUGGCGUGaaCUGCGuGGCUGccaGCa -3'
miRNA:   3'- ucCCGCUGCACggGACGC-CCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 96849 0.68 0.468481
Target:  5'- cGGGGuCGACGggggGCUCggggggcGCGGGUagcGUGCg -3'
miRNA:   3'- -UCCC-GCUGCa---CGGGa------CGCCCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 44305 0.68 0.468481
Target:  5'- cAGGGCcGC-UGCCC-GCGGGCgccGCa -3'
miRNA:   3'- -UCCCGcUGcACGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 134857 0.68 0.459491
Target:  5'- cGGGGacaaGGCGcccgcGCCCccGCGGGCcccugcUGUGCg -3'
miRNA:   3'- -UCCCg---CUGCa----CGGGa-CGCCCG------ACACG- -5'
23758 5' -62.6 NC_005261.1 + 105592 0.68 0.459491
Target:  5'- cGGGGCG-CGUGCgcgcgacgaacgCCUGCGGcacguccccGCUcccGUGCg -3'
miRNA:   3'- -UCCCGCuGCACG------------GGACGCC---------CGA---CACG- -5'
23758 5' -62.6 NC_005261.1 + 38950 0.68 0.459491
Target:  5'- cGGGCcGCG-GCgC-GCGGGCUGcGCa -3'
miRNA:   3'- uCCCGcUGCaCGgGaCGCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 51778 0.68 0.441793
Target:  5'- uGGcCGGCGUcGCCCUGCuGGCcGUGg -3'
miRNA:   3'- uCCcGCUGCA-CGGGACGcCCGaCACg -5'
23758 5' -62.6 NC_005261.1 + 125709 0.68 0.441793
Target:  5'- -cGGCGACG-GCCgCcGCGGGCUcgGCu -3'
miRNA:   3'- ucCCGCUGCaCGG-GaCGCCCGAcaCG- -5'
23758 5' -62.6 NC_005261.1 + 88178 0.69 0.433089
Target:  5'- cGGGGCGACGccggcgGCgCCggcgagGCGGGCcGcGCc -3'
miRNA:   3'- -UCCCGCUGCa-----CG-GGa-----CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 111755 0.69 0.424487
Target:  5'- cGGGCagcuCGUGCaCCUGCgcugcgcgcccGGGgUGUGCc -3'
miRNA:   3'- uCCCGcu--GCACG-GGACG-----------CCCgACACG- -5'
23758 5' -62.6 NC_005261.1 + 38344 0.69 0.415987
Target:  5'- uGGGGCG-CGcacGCCCaGCGGGCcuuUGggGCg -3'
miRNA:   3'- -UCCCGCuGCa--CGGGaCGCCCG---ACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 30875 0.69 0.399304
Target:  5'- gGGGGcCGcCG-GCCCUGCcgcccgagcucGGGCUGggGCc -3'
miRNA:   3'- -UCCC-GCuGCaCGGGACG-----------CCCGACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 98568 0.69 0.399304
Target:  5'- cGGGCGGCc-GUCCUccGCGGGCUcggGCg -3'
miRNA:   3'- uCCCGCUGcaCGGGA--CGCCCGAca-CG- -5'
23758 5' -62.6 NC_005261.1 + 611 0.69 0.399304
Target:  5'- gAGGGCGA-GUGCCCgacGCaGGGgaUGUGg -3'
miRNA:   3'- -UCCCGCUgCACGGGa--CG-CCCg-ACACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.