miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 611 0.69 0.399304
Target:  5'- gAGGGCGA-GUGCCCgacGCaGGGgaUGUGg -3'
miRNA:   3'- -UCCCGCUgCACGGGa--CG-CCCg-ACACg -5'
23758 5' -62.6 NC_005261.1 + 1048 0.67 0.495972
Target:  5'- cGGGCGGCGgcguuagcgGCgCgGgGGGCUG-GCc -3'
miRNA:   3'- uCCCGCUGCa--------CGgGaCgCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 2627 0.69 0.391124
Target:  5'- cGGGCGGCaugggGCCCagcacGCGGGCgg-GCa -3'
miRNA:   3'- uCCCGCUGca---CGGGa----CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 4401 0.67 0.495972
Target:  5'- cGGGCGGCGgcggcGCgCUGCcGGGCcagGCc -3'
miRNA:   3'- uCCCGCUGCa----CGgGACG-CCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 4462 0.66 0.552958
Target:  5'- cAGcGGCGGCG-GCCCgucGCGcGGCgccGCg -3'
miRNA:   3'- -UC-CCGCUGCaCGGGa--CGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 4541 0.67 0.514699
Target:  5'- gAGGGCGcCGgGCCCUgGCcuuGGCUGgauccGCg -3'
miRNA:   3'- -UCCCGCuGCaCGGGA-CGc--CCGACa----CG- -5'
23758 5' -62.6 NC_005261.1 + 11831 0.74 0.208357
Target:  5'- gGGGGCGGgG-GCCCcGCGGGCgc-GCg -3'
miRNA:   3'- -UCCCGCUgCaCGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 11880 0.67 0.542342
Target:  5'- cGGGGCGagcccgcccgcacGCGcGCCCgccGCGGGCccgGCc -3'
miRNA:   3'- -UCCCGC-------------UGCaCGGGa--CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 12312 0.67 0.52417
Target:  5'- cGGGCG-CGUaGCCg-GCGGGCgc-GCg -3'
miRNA:   3'- uCCCGCuGCA-CGGgaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 12425 0.66 0.592023
Target:  5'- aGGGGCGGCGgagGgCUUGCGGcGUcGgccGCg -3'
miRNA:   3'- -UCCCGCUGCa--CgGGACGCC-CGaCa--CG- -5'
23758 5' -62.6 NC_005261.1 + 12722 0.67 0.501559
Target:  5'- cGGGCGcGCGgGCCCgccggcccccuggGCGGGCccgGCg -3'
miRNA:   3'- uCCCGC-UGCaCGGGa------------CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 13071 0.7 0.367252
Target:  5'- cGGGCG-CGUccgccgGCCCgucgGCGGGCg--GCg -3'
miRNA:   3'- uCCCGCuGCA------CGGGa---CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 13692 0.73 0.240094
Target:  5'- cGGGCGugGgGCgggGCGGGCUGgggGCg -3'
miRNA:   3'- uCCCGCugCaCGggaCGCCCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 16409 0.66 0.552958
Target:  5'- cGGGCGguGCGggagagGCCCccucgacgGCGGGCg--GCg -3'
miRNA:   3'- uCCCGC--UGCa-----CGGGa-------CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 17076 0.72 0.269539
Target:  5'- aAGGGCGACGggauggGCCCgGUGG--UGUGCc -3'
miRNA:   3'- -UCCCGCUGCa-----CGGGaCGCCcgACACG- -5'
23758 5' -62.6 NC_005261.1 + 17176 0.71 0.295138
Target:  5'- cGGGCGugGgcaGCCCUGCcGcGGCg--GCg -3'
miRNA:   3'- uCCCGCugCa--CGGGACG-C-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 17555 0.7 0.3444
Target:  5'- cGGGCccgccguucGGCGgugGCCUUGCGGGCgagcugGCa -3'
miRNA:   3'- uCCCG---------CUGCa--CGGGACGCCCGaca---CG- -5'
23758 5' -62.6 NC_005261.1 + 20442 0.74 0.193889
Target:  5'- gGGGGagcgcaGACGUGCCCgcGCGGGUgugGCg -3'
miRNA:   3'- -UCCCg-----CUGCACGGGa-CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 21014 0.73 0.223748
Target:  5'- gGGGGCGugacacCGaGCCCUGgGGGCgcgcaccGUGCg -3'
miRNA:   3'- -UCCCGCu-----GCaCGGGACgCCCGa------CACG- -5'
23758 5' -62.6 NC_005261.1 + 21813 0.7 0.351903
Target:  5'- cGGGC--CGgGCCCgcgGCGGGCgcgcGUGCg -3'
miRNA:   3'- uCCCGcuGCaCGGGa--CGCCCGa---CACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.