Results 1 - 20 of 102 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 131677 | 0.66 | 0.601874 |
Target: 5'- aGGGuGCGACc-GCCCUGCGcGCg--GCg -3' miRNA: 3'- -UCC-CGCUGcaCGGGACGCcCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 93913 | 0.72 | 0.288565 |
Target: 5'- cGGGCG-CGgcGCCC-GCGGGCU-UGCg -3' miRNA: 3'- uCCCGCuGCa-CGGGaCGCCCGAcACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 17176 | 0.71 | 0.295138 |
Target: 5'- cGGGCGugGgcaGCCCUGCcGcGGCg--GCg -3' miRNA: 3'- uCCCGCugCa--CGGGACG-C-CCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 74475 | 0.71 | 0.295138 |
Target: 5'- cGGcGCGGCGUGCCUggGCGGGaucucgGCg -3' miRNA: 3'- uCC-CGCUGCACGGGa-CGCCCgaca--CG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 118856 | 0.71 | 0.301152 |
Target: 5'- gAGGGCGGCGcgcccgcgGCCCUggccucggccaccGCGGGCgcgcugGUGg -3' miRNA: 3'- -UCCCGCUGCa-------CGGGA-------------CGCCCGa-----CACg -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 132645 | 0.71 | 0.301826 |
Target: 5'- cGGGcGCGGCG-GCCCUaGCGGccGCguguggGUGCg -3' miRNA: 3'- -UCC-CGCUGCaCGGGA-CGCC--CGa-----CACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 121807 | 0.71 | 0.308631 |
Target: 5'- gGGGGCG-CGUggcuggGCUCUGCGGGCcGccGCg -3' miRNA: 3'- -UCCCGCuGCA------CGGGACGCCCGaCa-CG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 27236 | 0.71 | 0.308631 |
Target: 5'- aAGGGgGAgGcGCCUggggugggGCGGGgUGUGCg -3' miRNA: 3'- -UCCCgCUgCaCGGGa-------CGCCCgACACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 98057 | 0.71 | 0.315552 |
Target: 5'- cGGGCGGCGggaCC-GCGGGCggcggGUGUg -3' miRNA: 3'- uCCCGCUGCacgGGaCGCCCGa----CACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 64919 | 0.72 | 0.288565 |
Target: 5'- cAGcGCGGCGUGCuCCUGCucgccgcccagGGGCgcGUGCg -3' miRNA: 3'- -UCcCGCUGCACG-GGACG-----------CCCGa-CACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 22750 | 0.72 | 0.274512 |
Target: 5'- cGGGGCGGCGgcgGCCCacgcgucuggggGCGGGCcccGCg -3' miRNA: 3'- -UCCCGCUGCa--CGGGa-----------CGCCCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 17076 | 0.72 | 0.269539 |
Target: 5'- aAGGGCGACGggauggGCCCgGUGG--UGUGCc -3' miRNA: 3'- -UCCCGCUGCa-----CGGGaCGCCcgACACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 20442 | 0.74 | 0.193889 |
Target: 5'- gGGGGagcgcaGACGUGCCCgcGCGGGUgugGCg -3' miRNA: 3'- -UCCCg-----CUGCACGGGa-CGCCCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 110242 | 0.74 | 0.198611 |
Target: 5'- uGGGCGGCGcggcGCCCgGgGGGCUGcggGCc -3' miRNA: 3'- uCCCGCUGCa---CGGGaCgCCCGACa--CG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 11831 | 0.74 | 0.208357 |
Target: 5'- gGGGGCGGgG-GCCCcGCGGGCgc-GCg -3' miRNA: 3'- -UCCCGCUgCaCGGGaCGCCCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 21014 | 0.73 | 0.223748 |
Target: 5'- gGGGGCGugacacCGaGCCCUGgGGGCgcgcaccGUGCg -3' miRNA: 3'- -UCCCGCu-----GCaCGGGACgCCCGa------CACG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 13692 | 0.73 | 0.240094 |
Target: 5'- cGGGCGugGgGCgggGCGGGCUGgggGCg -3' miRNA: 3'- uCCCGCugCaCGggaCGCCCGACa--CG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 121778 | 0.73 | 0.240094 |
Target: 5'- uGGGGUGGCcgcgGCCg-GCGGGCUGgGCa -3' miRNA: 3'- -UCCCGCUGca--CGGgaCGCCCGACaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 109869 | 0.72 | 0.263426 |
Target: 5'- gGGGGCaGCGggGCCC-GCGGGCgg-GCg -3' miRNA: 3'- -UCCCGcUGCa-CGGGaCGCCCGacaCG- -5' |
|||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 43615 | 0.72 | 0.269539 |
Target: 5'- gAGGGCGA-GUGCUucgugCUGUGGGCgcccGUGUg -3' miRNA: 3'- -UCCCGCUgCACGG-----GACGCCCGa---CACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home