miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 68769 0.66 0.983686
Target:  5'- cGCGGAgccgcCGUGuCgAACUUCguGCaGGUGCg -3'
miRNA:   3'- -CGUCU-----GCAU-G-UUGAAGguCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 85284 0.66 0.983686
Target:  5'- uUAGGCGUcgggcucccggGCGGCUUCCcGUUGGgGa -3'
miRNA:   3'- cGUCUGCA-----------UGUUGAAGGuCGACCgCg -5'
23760 5' -52.1 NC_005261.1 + 98358 0.66 0.983686
Target:  5'- gGCGGGgGUgggcGCGGgcUCUGGCgGGCGCa -3'
miRNA:   3'- -CGUCUgCA----UGUUgaAGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 50811 0.66 0.983686
Target:  5'- cGCcauGACGggcuccgcGCGGCUUggcgCCgcgAGCUGGCGCc -3'
miRNA:   3'- -CGu--CUGCa-------UGUUGAA----GG---UCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 111440 0.66 0.983686
Target:  5'- -gAGACGgACGACcggCgAGCcgGGCGCc -3'
miRNA:   3'- cgUCUGCaUGUUGaa-GgUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 32024 0.66 0.983686
Target:  5'- gGCAGcGCGUGCuGCcg-CGGCUcgacgGGCGCa -3'
miRNA:   3'- -CGUC-UGCAUGuUGaagGUCGA-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 97120 0.66 0.983686
Target:  5'- cGCGGcCGgagGCGccGCggCCAcgcucggaggcGCUGGCGCc -3'
miRNA:   3'- -CGUCuGCa--UGU--UGaaGGU-----------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 106093 0.66 0.983686
Target:  5'- aGCGG-CGaucGCGACgucggCCGGCgucgccGGCGCg -3'
miRNA:   3'- -CGUCuGCa--UGUUGaa---GGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 83078 0.66 0.983686
Target:  5'- cGCGG-CGgcCGgcGCUUCCAGCgccuccaGCGCc -3'
miRNA:   3'- -CGUCuGCauGU--UGAAGGUCGac-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 81506 0.66 0.983686
Target:  5'- cGCGGcGCGcGCGccGCcgCCGGCgccaGGCGCu -3'
miRNA:   3'- -CGUC-UGCaUGU--UGaaGGUCGa---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 132643 0.66 0.983686
Target:  5'- cGCGGGCGcgGCGGCc-CUAGC-GGcCGCg -3'
miRNA:   3'- -CGUCUGCa-UGUUGaaGGUCGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 134543 0.66 0.983686
Target:  5'- cGCAGACGU--GACcgCCccuuGCUGG-GCg -3'
miRNA:   3'- -CGUCUGCAugUUGaaGGu---CGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 110210 0.66 0.983686
Target:  5'- gGCcuGGCGcaaccucgGCGACgccUCCAGCgugggcGGCGCg -3'
miRNA:   3'- -CGu-CUGCa-------UGUUGa--AGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 10258 0.66 0.983492
Target:  5'- cGCGGGCcugGCGcCUUCUgcccugaGGaCUGGCGCc -3'
miRNA:   3'- -CGUCUGca-UGUuGAAGG-------UC-GACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 135884 0.66 0.983296
Target:  5'- aGCAGGCcUGCGGCagcacgacgugCgGGCUGGuCGCc -3'
miRNA:   3'- -CGUCUGcAUGUUGaa---------GgUCGACC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 56618 0.66 0.983296
Target:  5'- cGCGcGCGUGgAGCcccCCAGCgaccagacgcggGGCGCg -3'
miRNA:   3'- -CGUcUGCAUgUUGaa-GGUCGa-----------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20078 0.66 0.983099
Target:  5'- cGCuGACGUcugaguauaaauccGCGgggGCUUCCgcGGCaaGGCGCg -3'
miRNA:   3'- -CGuCUGCA--------------UGU---UGAAGG--UCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 64920 0.66 0.981667
Target:  5'- aGCGcGGCGUGCuccuGCUcgccgcCCAGg-GGCGCg -3'
miRNA:   3'- -CGU-CUGCAUGu---UGAa-----GGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 3544 0.66 0.981667
Target:  5'- --cGGCGcGCAGCg--CGGCgGGCGCg -3'
miRNA:   3'- cguCUGCaUGUUGaagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 56074 0.66 0.981667
Target:  5'- -uGGGCGaGCAguccgcucgcuACUUCCAGCggcuccuGCGCg -3'
miRNA:   3'- cgUCUGCaUGU-----------UGAAGGUCGac-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.