miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 13113 0.66 0.974486
Target:  5'- cGgGGGCGU-CGGCggCC-GCggGGCGCg -3'
miRNA:   3'- -CgUCUGCAuGUUGaaGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 88724 0.66 0.97169
Target:  5'- uGCGGG-GUgcGCGAUgagggCCAGCUGGUGg -3'
miRNA:   3'- -CGUCUgCA--UGUUGaa---GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 38987 0.66 0.97169
Target:  5'- uGCAGAUGUuucuGCUgugCCAGCgcgcccacGCGCa -3'
miRNA:   3'- -CGUCUGCAugu-UGAa--GGUCGac------CGCG- -5'
23760 5' -52.1 NC_005261.1 + 43555 0.66 0.97169
Target:  5'- -gAGAUccucUACAACUUCCgcgAGC-GGCGCu -3'
miRNA:   3'- cgUCUGc---AUGUUGAAGG---UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 114059 0.66 0.974486
Target:  5'- -aGGACGUggcGCGGCU--CAGC-GGCGCc -3'
miRNA:   3'- cgUCUGCA---UGUUGAagGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134078 0.66 0.974486
Target:  5'- cGCGGcucAUGUGCgAGCUcUCGGCgcgccGGCGCg -3'
miRNA:   3'- -CGUC---UGCAUG-UUGAaGGUCGa----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 14961 0.66 0.971399
Target:  5'- aGCGGGCGUgccugggGCGACUgcgcggCCGcGCcGGcCGCg -3'
miRNA:   3'- -CGUCUGCA-------UGUUGAa-----GGU-CGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 134543 0.66 0.983686
Target:  5'- cGCAGACGU--GACcgCCccuuGCUGG-GCg -3'
miRNA:   3'- -CGUCUGCAugUUGaaGGu---CGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 119390 0.66 0.974486
Target:  5'- --cGACGaACGACggugCCGGCacccucGGCGCg -3'
miRNA:   3'- cguCUGCaUGUUGaa--GGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 118406 0.66 0.97169
Target:  5'- cGCGGGCGccGCAGCcgcgCUGGCUGuCGCc -3'
miRNA:   3'- -CGUCUGCa-UGUUGaa--GGUCGACcGCG- -5'
23760 5' -52.1 NC_005261.1 + 18349 0.66 0.974486
Target:  5'- cGCAGcACGaGCGACgUCCcGCUaaGCGCg -3'
miRNA:   3'- -CGUC-UGCaUGUUGaAGGuCGAc-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 63952 0.66 0.97169
Target:  5'- uGCAGcccCGUGCG-----CAGCUGGUGCg -3'
miRNA:   3'- -CGUCu--GCAUGUugaagGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29817 0.66 0.97169
Target:  5'- cGCGGGCGcccGCGccgcGCUcgCCgAGCUGcGCGCc -3'
miRNA:   3'- -CGUCUGCa--UGU----UGAa-GG-UCGAC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 59109 0.66 0.973669
Target:  5'- cGCAGGCGcGCGcgaGCUcCCcggccaccgacucaGGCcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU---UGAaGG--------------UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 71102 0.66 0.977075
Target:  5'- -aAGGCGUACAcgGCgcgCAGCUuGCGCc -3'
miRNA:   3'- cgUCUGCAUGU--UGaagGUCGAcCGCG- -5'
23760 5' -52.1 NC_005261.1 + 1548 0.66 0.97169
Target:  5'- cGCAGGCcagGUACAcCggCCgcAGC-GGCGCg -3'
miRNA:   3'- -CGUCUG---CAUGUuGaaGG--UCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 54298 0.66 0.971105
Target:  5'- cGCGGGCGccgguuaacacCAGC-UCCAGCaaGGCGUg -3'
miRNA:   3'- -CGUCUGCau---------GUUGaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 26080 0.66 0.97081
Target:  5'- aGCAGACGcggcaGCGGCggcagcagaggcagaUCCAGCggccggguaagcaGGCGCg -3'
miRNA:   3'- -CGUCUGCa----UGUUGa--------------AGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127677 0.66 0.97169
Target:  5'- -gGGACGgcgGCGgccGCUgccCCGGC-GGCGCc -3'
miRNA:   3'- cgUCUGCa--UGU---UGAa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 46478 0.66 0.97169
Target:  5'- cGCAG--GUGCAGCUcggcgcccUCC-GCggGGCGCa -3'
miRNA:   3'- -CGUCugCAUGUUGA--------AGGuCGa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.