miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 13113 0.66 0.974486
Target:  5'- cGgGGGCGU-CGGCggCC-GCggGGCGCg -3'
miRNA:   3'- -CgUCUGCAuGUUGaaGGuCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 13690 0.71 0.823945
Target:  5'- cGCGGGCGUGgGGCggggCgGGCUGGgGg -3'
miRNA:   3'- -CGUCUGCAUgUUGaa--GgUCGACCgCg -5'
23760 5' -52.1 NC_005261.1 + 14930 0.7 0.865413
Target:  5'- cCAGGau--CGACg-CCAGCUGGCGCu -3'
miRNA:   3'- cGUCUgcauGUUGaaGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 14961 0.66 0.971399
Target:  5'- aGCGGGCGUgccugggGCGACUgcgcggCCGcGCcGGcCGCg -3'
miRNA:   3'- -CGUCUGCA-------UGUUGAa-----GGU-CGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 15253 0.69 0.907746
Target:  5'- cGCAGugGgccGCGAUcgccCCGGC-GGCGCc -3'
miRNA:   3'- -CGUCugCa--UGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 17820 0.72 0.777836
Target:  5'- uGCGGGCGuUGC-AC-UCCAGCgaGGCGUu -3'
miRNA:   3'- -CGUCUGC-AUGuUGaAGGUCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 18349 0.66 0.974486
Target:  5'- cGCAGcACGaGCGACgUCCcGCUaaGCGCg -3'
miRNA:   3'- -CGUC-UGCaUGUUGaAGGuCGAc-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 19056 0.7 0.865413
Target:  5'- gGCAGGgGUACgGGCUgCgCGGCUcucGGCGCg -3'
miRNA:   3'- -CGUCUgCAUG-UUGAaG-GUCGA---CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20078 0.66 0.983099
Target:  5'- cGCuGACGUcugaguauaaauccGCGgggGCUUCCgcGGCaaGGCGCg -3'
miRNA:   3'- -CGuCUGCA--------------UGU---UGAAGG--UCGa-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20449 0.71 0.823945
Target:  5'- cGCAGACGUGCccgcgCgGGUgUGGCGCu -3'
miRNA:   3'- -CGUCUGCAUGuugaaGgUCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20563 0.74 0.697354
Target:  5'- gGCGGGCuGcGCAGCggcgCCGGC-GGCGCg -3'
miRNA:   3'- -CGUCUG-CaUGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 21172 0.68 0.950196
Target:  5'- aGCAGAgaUGCAGCc----GCUGGCGCg -3'
miRNA:   3'- -CGUCUgcAUGUUGaagguCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 21204 0.69 0.926128
Target:  5'- cGCGGACGcuggccccggccgcgACGGCgggcccgUCGGCUGGCGg -3'
miRNA:   3'- -CGUCUGCa--------------UGUUGaa-----GGUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 21669 0.69 0.907746
Target:  5'- cCGGuACGUGC----UCCGGCUGGgGCu -3'
miRNA:   3'- cGUC-UGCAUGuugaAGGUCGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 26080 0.66 0.97081
Target:  5'- aGCAGACGcggcaGCGGCggcagcagaggcagaUCCAGCggccggguaagcaGGCGCg -3'
miRNA:   3'- -CGUCUGCa----UGUUGa--------------AGGUCGa------------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29209 0.69 0.925016
Target:  5'- cGCGGGCGcGCGACUggggCCcgcgcaGGCUacgccgcGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUGAa---GG------UCGA-------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29547 0.71 0.823945
Target:  5'- cGCGGGCccg-GACcUgCAGCUGGCGCg -3'
miRNA:   3'- -CGUCUGcaugUUGaAgGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 29817 0.66 0.97169
Target:  5'- cGCGGGCGcccGCGccgcGCUcgCCgAGCUGcGCGCc -3'
miRNA:   3'- -CGUCUGCa--UGU----UGAa-GG-UCGAC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 29907 0.72 0.796766
Target:  5'- gGCAGcgcGCGaGCGGCUgcgCgAGCUGGCGg -3'
miRNA:   3'- -CGUC---UGCaUGUUGAa--GgUCGACCGCg -5'
23760 5' -52.1 NC_005261.1 + 29977 0.67 0.958299
Target:  5'- cGCGGuGCGccgcCGGCgcgUCCGGCagcGGCGCg -3'
miRNA:   3'- -CGUC-UGCau--GUUGa--AGGUCGa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.