miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 138121 0.73 0.75835
Target:  5'- cGgGGACGggggccGCGACggCCGGCgggaUGGCGCg -3'
miRNA:   3'- -CgUCUGCa-----UGUUGaaGGUCG----ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 136483 0.69 0.901299
Target:  5'- cGCGGGCa-GCAGCgagCAGCUcGGCGCc -3'
miRNA:   3'- -CGUCUGcaUGUUGaagGUCGA-CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 135884 0.66 0.983296
Target:  5'- aGCAGGCcUGCGGCagcacgacgugCgGGCUGGuCGCc -3'
miRNA:   3'- -CGUCUGcAUGUUGaa---------GgUCGACC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 135722 0.7 0.894603
Target:  5'- cCAGcCuGUACAugUUCgugauGCUGGCGCg -3'
miRNA:   3'- cGUCuG-CAUGUugAAGgu---CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 135595 0.68 0.943004
Target:  5'- gGCcGGCGccgugcuggagaaccUGCGGCUga-AGCUGGCGCc -3'
miRNA:   3'- -CGuCUGC---------------AUGUUGAaggUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134974 0.7 0.864635
Target:  5'- cGCAGACGgcgAgGACggggccgCCGGggcgcccCUGGCGCg -3'
miRNA:   3'- -CGUCUGCa--UgUUGaa-----GGUC-------GACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134543 0.66 0.983686
Target:  5'- cGCAGACGU--GACcgCCccuuGCUGG-GCg -3'
miRNA:   3'- -CGUCUGCAugUUGaaGGu---CGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 134220 0.69 0.913943
Target:  5'- cGCGG-CGgccgGCAGCgu-CGGCgUGGCGCa -3'
miRNA:   3'- -CGUCuGCa---UGUUGaagGUCG-ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 134078 0.66 0.974486
Target:  5'- cGCGGcucAUGUGCgAGCUcUCGGCgcgccGGCGCg -3'
miRNA:   3'- -CGUC---UGCAUG-UUGAaGGUCGa----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 133572 0.79 0.422966
Target:  5'- gGCGGACGgcUAACcuugCCGcGCUGGCGCu -3'
miRNA:   3'- -CGUCUGCauGUUGaa--GGU-CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 133259 0.66 0.977075
Target:  5'- cGCAGGCGgcgcGCGAgUaCCAgggcGCcGGCGCc -3'
miRNA:   3'- -CGUCUGCa---UGUUgAaGGU----CGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 132643 0.66 0.983686
Target:  5'- cGCGGGCGcgGCGGCc-CUAGC-GGcCGCg -3'
miRNA:   3'- -CGUCUGCa-UGUUGaaGGUCGaCC-GCG- -5'
23760 5' -52.1 NC_005261.1 + 132595 0.68 0.945776
Target:  5'- cGCGGACGcccggccCGGCgagCCGccagggggcGCUGGCGCc -3'
miRNA:   3'- -CGUCUGCau-----GUUGaa-GGU---------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 132344 0.66 0.979466
Target:  5'- -gGGGCcaugcGCAGCUUCCGccGC-GGCGCg -3'
miRNA:   3'- cgUCUGca---UGUUGAAGGU--CGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 131749 0.73 0.728251
Target:  5'- cGCGGACG-GCAcg--CCGGCcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUugaaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 129596 0.68 0.936183
Target:  5'- cGCGGgacACGcgGCAAUUUCgCGGCggggucgGGCGCc -3'
miRNA:   3'- -CGUC---UGCa-UGUUGAAG-GUCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 129190 0.71 0.823945
Target:  5'- cGCAGgccagcGCGUggcGCAGCUgcUUCuGCUGGUGCg -3'
miRNA:   3'- -CGUC------UGCA---UGUUGA--AGGuCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127677 0.66 0.97169
Target:  5'- -gGGACGgcgGCGgccGCUgccCCGGC-GGCGCc -3'
miRNA:   3'- cgUCUGCa--UGU---UGAa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127632 0.7 0.873061
Target:  5'- cCGGACGcgacgGCGGCggcgCCGGggGGCGCg -3'
miRNA:   3'- cGUCUGCa----UGUUGaa--GGUCgaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 127487 0.7 0.887661
Target:  5'- cCAGACGcugGCGGCUgCCuGCcgGGCGUa -3'
miRNA:   3'- cGUCUGCa--UGUUGAaGGuCGa-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.