miRNA display CGI


Results 1 - 20 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 5' -52.1 NC_005261.1 + 134543 0.66 0.983686
Target:  5'- cGCAGACGU--GACcgCCccuuGCUGG-GCg -3'
miRNA:   3'- -CGUCUGCAugUUGaaGGu---CGACCgCG- -5'
23760 5' -52.1 NC_005261.1 + 64277 0.75 0.655386
Target:  5'- cGCcGugGUGCAGCgccgcgUCCAGC-GuGCGCa -3'
miRNA:   3'- -CGuCugCAUGUUGa-----AGGUCGaC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 68515 0.74 0.686925
Target:  5'- uGCAGGCGUGCcug--CCGGCgccgccGGCGCc -3'
miRNA:   3'- -CGUCUGCAUGuugaaGGUCGa-----CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 77306 0.74 0.686925
Target:  5'- aGCGGACGcGCAcgccagccggaGCUUCC-GCcGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGU-----------UGAAGGuCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 103452 0.74 0.691103
Target:  5'- cGCGGuCGgccGCcgcgcccgucgccagGGCgUCCAGCUGGCGCa -3'
miRNA:   3'- -CGUCuGCa--UG---------------UUGaAGGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 20563 0.74 0.697354
Target:  5'- gGCGGGCuGcGCAGCggcgCCGGC-GGCGCg -3'
miRNA:   3'- -CGUCUG-CaUGUUGaa--GGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 75781 0.73 0.728251
Target:  5'- cGCGGACaagcuccggaACAACUUCCAgaucggcacGCUGGUGCc -3'
miRNA:   3'- -CGUCUGca--------UGUUGAAGGU---------CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 131749 0.73 0.728251
Target:  5'- cGCGGACG-GCAcg--CCGGCcGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUugaaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 101696 0.73 0.738386
Target:  5'- aGCGGGCGUGgucgaAGCgcUCCAGCUGcgccaGCGCg -3'
miRNA:   3'- -CGUCUGCAUg----UUGa-AGGUCGAC-----CGCG- -5'
23760 5' -52.1 NC_005261.1 + 44727 0.75 0.655386
Target:  5'- cGCAgGGCGcUGCAGCUgggCCccgAGCUGcGCGCg -3'
miRNA:   3'- -CGU-CUGC-AUGUUGAa--GG---UCGAC-CGCG- -5'
23760 5' -52.1 NC_005261.1 + 36737 0.75 0.64482
Target:  5'- cGCGG-CGguCAGCUacccaggCCAGCUGGCGCc -3'
miRNA:   3'- -CGUCuGCauGUUGAa------GGUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 105275 0.75 0.613095
Target:  5'- gGCGGGCG-GCAGCg-CCGGCgagcccgGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGUUGaaGGUCGa------CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 39882 0.78 0.469999
Target:  5'- aGCAGgccgcGCGcGCGGCUgugCAGCUGGCGCg -3'
miRNA:   3'- -CGUC-----UGCaUGUUGAag-GUCGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 48427 0.77 0.499466
Target:  5'- aGCAGGCgGUACAGC-UCgCGGUgcgUGGCGCg -3'
miRNA:   3'- -CGUCUG-CAUGUUGaAG-GUCG---ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 87746 0.77 0.499466
Target:  5'- cGCAGACGUACAcgaaGCccgCgGGCccUGGCGCg -3'
miRNA:   3'- -CGUCUGCAUGU----UGaa-GgUCG--ACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 75208 0.76 0.550264
Target:  5'- gGCGGccGCGgugGCGGCgcugcagUCCAGCgGGCGCa -3'
miRNA:   3'- -CGUC--UGCa--UGUUGa------AGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 87470 0.76 0.550264
Target:  5'- cGCAGGCGcGCGucagguucggcGCggCCGuGCUGGCGCg -3'
miRNA:   3'- -CGUCUGCaUGU-----------UGaaGGU-CGACCGCG- -5'
23760 5' -52.1 NC_005261.1 + 57305 0.76 0.575223
Target:  5'- cGCGcGACGUccucguccaugacucGCAGCUgCCAGCcGGCGCc -3'
miRNA:   3'- -CGU-CUGCA---------------UGUUGAaGGUCGaCCGCG- -5'
23760 5' -52.1 NC_005261.1 + 52987 0.76 0.602539
Target:  5'- gGCAGGCGgggGCGGCgcCCAgGCgucGGCGCa -3'
miRNA:   3'- -CGUCUGCa--UGUUGaaGGU-CGa--CCGCG- -5'
23760 5' -52.1 NC_005261.1 + 93674 0.76 0.602539
Target:  5'- cGCGGGCG-GCGGCg-CCGGCggGGCGCc -3'
miRNA:   3'- -CGUCUGCaUGUUGaaGGUCGa-CCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.