Results 21 - 40 of 239 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 28780 | 0.66 | 0.964179 |
Target: 5'- gGCcGCggcGCGGGCGCu-CGcGGCCGCGg -3' miRNA: 3'- -CGaUGa--UGUUCGCGcuGUaCCGGUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 43361 | 0.66 | 0.964179 |
Target: 5'- gGCUGgUGCcgcuGCgGCGGCAUcGGCCucGCGg -3' miRNA: 3'- -CGAUgAUGuu--CG-CGCUGUA-CCGG--UGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 97408 | 0.66 | 0.967485 |
Target: 5'- cGCggGCUugGCGGGCGCG-CcgGGCCuGCc -3' miRNA: 3'- -CGa-UGA--UGUUCGCGCuGuaCCGG-UGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 38593 | 0.66 | 0.970569 |
Target: 5'- cCUGCUGgcGGCccGCGGCuggcggguguUGGCCGCGg -3' miRNA: 3'- cGAUGAUguUCG--CGCUGu---------ACCGGUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 28576 | 0.66 | 0.970569 |
Target: 5'- gGCcgagGCgcGCGAGCGcCGGCG-GGCCGCc -3' miRNA: 3'- -CGa---UGa-UGUUCGC-GCUGUaCCGGUGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 111041 | 0.66 | 0.970569 |
Target: 5'- aGCgagcGCUACAAGUccuGCGACGUGcCCGuCGu -3' miRNA: 3'- -CGa---UGAUGUUCG---CGCUGUACcGGU-GC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 121430 | 0.66 | 0.970569 |
Target: 5'- cGCUACgggGC-GGCGgGGCGggcauggGGCCGuCGa -3' miRNA: 3'- -CGAUGa--UGuUCGCgCUGUa------CCGGU-GC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 119226 | 0.66 | 0.970569 |
Target: 5'- cCUGCcgggGCGAGCGUGGCcgaucgcGGCCAUc -3' miRNA: 3'- cGAUGa---UGUUCGCGCUGua-----CCGGUGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 57838 | 0.66 | 0.967485 |
Target: 5'- -gUGCUccGCGGGCGCGggcgGCAaGGCCuCGg -3' miRNA: 3'- cgAUGA--UGUUCGCGC----UGUaCCGGuGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 123001 | 0.66 | 0.967485 |
Target: 5'- gGCcACUACGGcCGCGGCcGUGGCgucCGCGa -3' miRNA: 3'- -CGaUGAUGUUcGCGCUG-UACCG---GUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 14038 | 0.66 | 0.973438 |
Target: 5'- aGCgggGCcaUGCGAGCGguccgcaGGCA-GGCCGCGu -3' miRNA: 3'- -CGa--UG--AUGUUCGCg------CUGUaCCGGUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 113168 | 0.66 | 0.964179 |
Target: 5'- aGCgcCUGCuccuGGC-CGuCAUGGCCACc -3' miRNA: 3'- -CGauGAUGu---UCGcGCuGUACCGGUGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 44311 | 0.66 | 0.973438 |
Target: 5'- cGCUGCccGCGGGCGCcgcaGACGgggGGCUggGg -3' miRNA: 3'- -CGAUGa-UGUUCGCG----CUGUa--CCGGugC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 113036 | 0.66 | 0.964179 |
Target: 5'- aGCggGCcGC--GCGCGGCGUGGCgCGCc -3' miRNA: 3'- -CGa-UGaUGuuCGCGCUGUACCG-GUGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 136744 | 0.66 | 0.970569 |
Target: 5'- cGCUGCUGCAAGC-CGuCgGUGGUgAgGa -3' miRNA: 3'- -CGAUGAUGUUCGcGCuG-UACCGgUgC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 42657 | 0.66 | 0.964179 |
Target: 5'- cGCggaACcagcCAAGCgGCGGCcgGGCCGCc -3' miRNA: 3'- -CGa--UGau--GUUCG-CGCUGuaCCGGUGc -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 88626 | 0.66 | 0.977106 |
Target: 5'- cGCUGCUggGCAugucggaggacggcaAGCGCGugGcGGUgCACGu -3' miRNA: 3'- -CGAUGA--UGU---------------UCGCGCugUaCCG-GUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 109327 | 0.66 | 0.972316 |
Target: 5'- -----cGCGAGCGCGGCcgcggggucggcGGCCGCGu -3' miRNA: 3'- cgaugaUGUUCGCGCUGua----------CCGGUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 137050 | 0.66 | 0.967165 |
Target: 5'- gGCggACcgucgGCAGGCGCGGaggcgcgggcaccCAUGGCgGCGc -3' miRNA: 3'- -CGa-UGa----UGUUCGCGCU-------------GUACCGgUGC- -5' |
|||||||
23765 | 5' | -52.6 | NC_005261.1 | + | 133049 | 0.66 | 0.964179 |
Target: 5'- cGC-ACgUGCu-GCGCGGCGUuGGCgGCGa -3' miRNA: 3'- -CGaUG-AUGuuCGCGCUGUA-CCGgUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home