miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 42657 0.66 0.964179
Target:  5'- cGCggaACcagcCAAGCgGCGGCcgGGCCGCc -3'
miRNA:   3'- -CGa--UGau--GUUCG-CGCUGuaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 97408 0.66 0.967485
Target:  5'- cGCggGCUugGCGGGCGCG-CcgGGCCuGCc -3'
miRNA:   3'- -CGa-UGA--UGUUCGCGCuGuaCCGG-UGc -5'
23765 5' -52.6 NC_005261.1 + 4855 0.66 0.967485
Target:  5'- cGCaGCcuCAAGgGCGGC--GGCCACGa -3'
miRNA:   3'- -CGaUGauGUUCgCGCUGuaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 19068 0.66 0.964179
Target:  5'- gGCUGCgcgGCucucGGCGCGugcuuGCGUGGCguUGg -3'
miRNA:   3'- -CGAUGa--UGu---UCGCGC-----UGUACCGguGC- -5'
23765 5' -52.6 NC_005261.1 + 88445 0.66 0.967485
Target:  5'- cGCUGCUGgccgcgccgcgUGAGCGUGugGgcgGGCCGu- -3'
miRNA:   3'- -CGAUGAU-----------GUUCGCGCugUa--CCGGUgc -5'
23765 5' -52.6 NC_005261.1 + 32198 0.66 0.964179
Target:  5'- cGCUGgaGCuGGCGCccGACGagcugccGGCCGCGg -3'
miRNA:   3'- -CGAUgaUGuUCGCG--CUGUa------CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 133049 0.66 0.964179
Target:  5'- cGC-ACgUGCu-GCGCGGCGUuGGCgGCGa -3'
miRNA:   3'- -CGaUG-AUGuuCGCGCUGUA-CCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 64046 0.66 0.964179
Target:  5'- gGCU-CUGCGc-CGCGugGUGcGCCACc -3'
miRNA:   3'- -CGAuGAUGUucGCGCugUAC-CGGUGc -5'
23765 5' -52.6 NC_005261.1 + 101948 0.66 0.964179
Target:  5'- -gUACUugGCGAGcCGgGGCAcGGCCGCc -3'
miRNA:   3'- cgAUGA--UGUUC-GCgCUGUaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 113036 0.66 0.964179
Target:  5'- aGCggGCcGC--GCGCGGCGUGGCgCGCc -3'
miRNA:   3'- -CGa-UGaUGuuCGCGCUGUACCG-GUGc -5'
23765 5' -52.6 NC_005261.1 + 118842 0.66 0.964179
Target:  5'- cGCU-CUGC-GGCGCGGag-GGCgGCGc -3'
miRNA:   3'- -CGAuGAUGuUCGCGCUguaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 90885 0.66 0.964179
Target:  5'- cGCUggGCgacgGCAuGGCGCGGCAggucucGGCgGCGc -3'
miRNA:   3'- -CGA--UGa---UGU-UCGCGCUGUa-----CCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 137050 0.66 0.967165
Target:  5'- gGCggACcgucgGCAGGCGCGGaggcgcgggcaccCAUGGCgGCGc -3'
miRNA:   3'- -CGa-UGa----UGUUCGCGCU-------------GUACCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 88626 0.66 0.977106
Target:  5'- cGCUGCUggGCAugucggaggacggcaAGCGCGugGcGGUgCACGu -3'
miRNA:   3'- -CGAUGA--UGU---------------UCGCGCugUaCCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 113168 0.66 0.964179
Target:  5'- aGCgcCUGCuccuGGC-CGuCAUGGCCACc -3'
miRNA:   3'- -CGauGAUGu---UCGcGCuGUACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 77197 0.66 0.967485
Target:  5'- uCUGCagGCGAGCGCGguguucccGC-UGGCCGgGg -3'
miRNA:   3'- cGAUGa-UGUUCGCGC--------UGuACCGGUgC- -5'
23765 5' -52.6 NC_005261.1 + 57838 0.66 0.967485
Target:  5'- -gUGCUccGCGGGCGCGggcgGCAaGGCCuCGg -3'
miRNA:   3'- cgAUGA--UGUUCGCGC----UGUaCCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 43361 0.66 0.964179
Target:  5'- gGCUGgUGCcgcuGCgGCGGCAUcGGCCucGCGg -3'
miRNA:   3'- -CGAUgAUGuu--CG-CGCUGUA-CCGG--UGC- -5'
23765 5' -52.6 NC_005261.1 + 58554 0.66 0.967485
Target:  5'- gGCUcCUGC--GC-CGuCGUGGCCGCGa -3'
miRNA:   3'- -CGAuGAUGuuCGcGCuGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 12316 0.66 0.964179
Target:  5'- cGCguaGCcgGCGGGCGCGcGCuUGGCCggcGCGg -3'
miRNA:   3'- -CGa--UGa-UGUUCGCGC-UGuACCGG---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.