miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 253 0.69 0.892309
Target:  5'- gGCUGCgGCGgcGGCuGCGGCGgcGGCUGCGg -3'
miRNA:   3'- -CGAUGaUGU--UCG-CGCUGUa-CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 289 0.69 0.892309
Target:  5'- gGCUGCgGCGgcGGCuGCGGCGgcGGCUGCGg -3'
miRNA:   3'- -CGAUGaUGU--UCG-CGCUGUa-CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 337 0.73 0.735538
Target:  5'- gGCUGCgGCGgcccgcagcccGGCGCGGCccGGCgGCGg -3'
miRNA:   3'- -CGAUGaUGU-----------UCGCGCUGuaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 1706 0.69 0.911846
Target:  5'- cGCUGCcggUACucGCGCGGCGgcacgGGCacCGCGg -3'
miRNA:   3'- -CGAUG---AUGuuCGCGCUGUa----CCG--GUGC- -5'
23765 5' -52.6 NC_005261.1 + 2393 0.7 0.852558
Target:  5'- cGCUgGCgGCGAGCGCGcccgcgggccccgcGCGgcggcgGGCCGCGa -3'
miRNA:   3'- -CGA-UGaUGUUCGCGC--------------UGUa-----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 3374 0.68 0.934376
Target:  5'- --gGCcGCGAGCGCGGCcgccaGCCGCGc -3'
miRNA:   3'- cgaUGaUGUUCGCGCUGuac--CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 3549 0.68 0.934376
Target:  5'- cGCaGCgcgGCGGGCGCGGCGccgcuaaGGCgCGCGc -3'
miRNA:   3'- -CGaUGa--UGUUCGCGCUGUa------CCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 3647 0.67 0.95162
Target:  5'- cGCcGCUagcgcgucuggagcGCAGGcCGCGGCcggcaGGCCGCGg -3'
miRNA:   3'- -CGaUGA--------------UGUUC-GCGCUGua---CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 3888 0.71 0.812312
Target:  5'- cGCaGCUcgGCGAGCGCGGCGcGGgCGCc -3'
miRNA:   3'- -CGaUGA--UGUUCGCGCUGUaCCgGUGc -5'
23765 5' -52.6 NC_005261.1 + 4151 0.73 0.704897
Target:  5'- cGCUGCaGCAGGCGCGccagcuGCAgguccgGGcCCGCGa -3'
miRNA:   3'- -CGAUGaUGUUCGCGC------UGUa-----CC-GGUGC- -5'
23765 5' -52.6 NC_005261.1 + 4855 0.66 0.967485
Target:  5'- cGCaGCcuCAAGgGCGGC--GGCCACGa -3'
miRNA:   3'- -CGaUGauGUUCgCGCUGuaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 12316 0.66 0.964179
Target:  5'- cGCguaGCcgGCGGGCGCGcGCuUGGCCggcGCGg -3'
miRNA:   3'- -CGa--UGa-UGUUCGCGC-UGuACCGG---UGC- -5'
23765 5' -52.6 NC_005261.1 + 12428 0.67 0.960645
Target:  5'- gGCgGCggaGGGCuuGCGGCGUcGGCCGCGu -3'
miRNA:   3'- -CGaUGaugUUCG--CGCUGUA-CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 14038 0.66 0.973438
Target:  5'- aGCgggGCcaUGCGAGCGguccgcaGGCA-GGCCGCGu -3'
miRNA:   3'- -CGa--UG--AUGUUCGCg------CUGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 14731 0.68 0.939375
Target:  5'- aGCgucacgACggugGCAGGgGCGAUcgGcGCCGCGc -3'
miRNA:   3'- -CGa-----UGa---UGUUCgCGCUGuaC-CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 15495 0.73 0.725407
Target:  5'- cGCUcGCUGCGGGCGgGGCGUGuGUCgGCGu -3'
miRNA:   3'- -CGA-UGAUGUUCGCgCUGUAC-CGG-UGC- -5'
23765 5' -52.6 NC_005261.1 + 16177 0.67 0.956094
Target:  5'- --gGC-GCGGGCGUGGCGggggugggcgggGGCCGCGu -3'
miRNA:   3'- cgaUGaUGUUCGCGCUGUa-----------CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 17055 0.66 0.976098
Target:  5'- gGCUGCUcgcggccguccuGgAAGgGCGACGggaugGGCC-CGg -3'
miRNA:   3'- -CGAUGA------------UgUUCgCGCUGUa----CCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 18259 0.69 0.911846
Target:  5'- cCUACUGUGAGCGUGACGcUGcCCGCGu -3'
miRNA:   3'- cGAUGAUGUUCGCGCUGU-ACcGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 19068 0.66 0.964179
Target:  5'- gGCUGCgcgGCucucGGCGCGugcuuGCGUGGCguUGg -3'
miRNA:   3'- -CGAUGa--UGu---UCGCGC-----UGUACCGguGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.