miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 32375 0.84 0.201338
Target:  5'- cGCUGgUGCAGGCGCGGCGcGGCgGCGu -3'
miRNA:   3'- -CGAUgAUGUUCGCGCUGUaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 119576 0.84 0.201338
Target:  5'- uGC-GCUGCGAGCGCGAgacCGUGGCCGCc -3'
miRNA:   3'- -CGaUGAUGUUCGCGCU---GUACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 32033 0.82 0.278461
Target:  5'- uGCUGCcgcggcucgACGGGCGCaagGACAUGGCCGCGc -3'
miRNA:   3'- -CGAUGa--------UGUUCGCG---CUGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 46570 0.82 0.285279
Target:  5'- cGCUGCUGCGAgcgcggccucGCGCGACAcGGCCcCGg -3'
miRNA:   3'- -CGAUGAUGUU----------CGCGCUGUaCCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 117956 0.81 0.299307
Target:  5'- cGCUGCUACGGGCGCGcucgcugcCAUGGgCGCGc -3'
miRNA:   3'- -CGAUGAUGUUCGCGCu-------GUACCgGUGC- -5'
23765 5' -52.6 NC_005261.1 + 117450 0.81 0.313863
Target:  5'- gGCUGCUGCAgaaGGUGCGGCAggucGGCgGCGa -3'
miRNA:   3'- -CGAUGAUGU---UCGCGCUGUa---CCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 66608 0.77 0.468004
Target:  5'- aGCUGCUGgauGGCGCGcgugcGCAUGGCCgACGa -3'
miRNA:   3'- -CGAUGAUgu-UCGCGC-----UGUACCGG-UGC- -5'
23765 5' -52.6 NC_005261.1 + 83196 0.77 0.477681
Target:  5'- cGCaGCUGCc-GCGUGACGUGGUCGCa -3'
miRNA:   3'- -CGaUGAUGuuCGCGCUGUACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 118923 0.77 0.487456
Target:  5'- gGC-GCcGCGGGCGCGGCGccgcgcggcUGGCCGCGg -3'
miRNA:   3'- -CGaUGaUGUUCGCGCUGU---------ACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 30032 0.77 0.497324
Target:  5'- gGCUGCaGCGGGcCGCGGCcugccGGCCGCGg -3'
miRNA:   3'- -CGAUGaUGUUC-GCGCUGua---CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 95638 0.76 0.517322
Target:  5'- aGCgGCUggGCGAGCGCGACGcgcgGcGCCGCGa -3'
miRNA:   3'- -CGaUGA--UGUUCGCGCUGUa---C-CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 97168 0.76 0.527441
Target:  5'- gGCcgGCUgggucGCGGGCGcCGGCcgGGCCGCGg -3'
miRNA:   3'- -CGa-UGA-----UGUUCGC-GCUGuaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 112335 0.76 0.527441
Target:  5'- cGCgcgACUGCAAGCGgGGCAucaUGGgCGCGc -3'
miRNA:   3'- -CGa--UGAUGUUCGCgCUGU---ACCgGUGC- -5'
23765 5' -52.6 NC_005261.1 + 135183 0.76 0.547892
Target:  5'- cGCUGCgGCucGCGCGgaGCAUGGCCgagGCGg -3'
miRNA:   3'- -CGAUGaUGuuCGCGC--UGUACCGG---UGC- -5'
23765 5' -52.6 NC_005261.1 + 43838 0.76 0.558212
Target:  5'- aGCUGCUcgGCGAGgGCGAggaCGcGGCCGCGu -3'
miRNA:   3'- -CGAUGA--UGUUCgCGCU---GUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 74060 0.76 0.568586
Target:  5'- gGCUGCgGCAGcuGCGCGACGcGGCC-CGg -3'
miRNA:   3'- -CGAUGaUGUU--CGCGCUGUaCCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 66285 0.76 0.568586
Target:  5'- cGCgGCUGucgcagugcguCAGGCGCGGCAcGGCCACc -3'
miRNA:   3'- -CGaUGAU-----------GUUCGCGCUGUaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 46228 0.75 0.579008
Target:  5'- gGCcGCguggACGAGCGCGucGCA-GGCCGCGg -3'
miRNA:   3'- -CGaUGa---UGUUCGCGC--UGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 80581 0.75 0.599965
Target:  5'- gGCUcCUugAGGCGcCGGCccGUGGCCAUGu -3'
miRNA:   3'- -CGAuGAugUUCGC-GCUG--UACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 74705 0.75 0.599965
Target:  5'- cGCcGC-GCGGGCGCGgaACcgGGCCGCGg -3'
miRNA:   3'- -CGaUGaUGUUCGCGC--UGuaCCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.