miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 20135 0.69 0.892309
Target:  5'- aGCgGCUccGCGAGCGCu-CA-GGCCGCGc -3'
miRNA:   3'- -CGaUGA--UGUUCGCGcuGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 20567 0.67 0.948619
Target:  5'- gGCUGCgcagcgGCGccggcGGCGCGG-GUGGCCuACGu -3'
miRNA:   3'- -CGAUGa-----UGU-----UCGCGCUgUACCGG-UGC- -5'
23765 5' -52.6 NC_005261.1 + 20829 0.68 0.928585
Target:  5'- aGCUgaACUGCGcguucgcgggggcAGCGUGGCGgcucuUGcGCCGCGg -3'
miRNA:   3'- -CGA--UGAUGU-------------UCGCGCUGU-----AC-CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 21186 0.71 0.821226
Target:  5'- cGCUGgcGCGAGCGCGGCcgcggacgcUGGCCcCGg -3'
miRNA:   3'- -CGAUgaUGUUCGCGCUGu--------ACCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 21749 0.71 0.820343
Target:  5'- gGCUGCUGCGccuggAGCGCGcGCcgGGCgagccgcCGCGg -3'
miRNA:   3'- -CGAUGAUGU-----UCGCGC-UGuaCCG-------GUGC- -5'
23765 5' -52.6 NC_005261.1 + 23186 0.68 0.939375
Target:  5'- gGCgACaGCGAGCGCGccgcggggcccGCAgcggcGGCCGCGc -3'
miRNA:   3'- -CGaUGaUGUUCGCGC-----------UGUa----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 23617 0.7 0.862897
Target:  5'- cGCcGCUGCcgGGGCGCGGCGggGGUCggGCGg -3'
miRNA:   3'- -CGaUGAUG--UUCGCGCUGUa-CCGG--UGC- -5'
23765 5' -52.6 NC_005261.1 + 25019 0.67 0.948619
Target:  5'- cGCUGgcauuCUGCcAGCGUucucACGUGGUCGCGg -3'
miRNA:   3'- -CGAU-----GAUGuUCGCGc---UGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 28230 0.68 0.934376
Target:  5'- aGCUACcccccgGCGcGCGCGAUAgcgggGGCUGCu -3'
miRNA:   3'- -CGAUGa-----UGUuCGCGCUGUa----CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 28576 0.66 0.970569
Target:  5'- gGCcgagGCgcGCGAGCGcCGGCG-GGCCGCc -3'
miRNA:   3'- -CGa---UGa-UGUUCGC-GCUGUaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 28780 0.66 0.964179
Target:  5'- gGCcGCggcGCGGGCGCu-CGcGGCCGCGg -3'
miRNA:   3'- -CGaUGa--UGUUCGCGcuGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 29236 0.73 0.69454
Target:  5'- gGCUACgccGCGGcgccGCGCGACG-GGCCGCc -3'
miRNA:   3'- -CGAUGa--UGUU----CGCGCUGUaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 29523 0.67 0.952869
Target:  5'- gGCcugGCUGCAgAGCGCGAagcucgcgGGCC-CGg -3'
miRNA:   3'- -CGa--UGAUGU-UCGCGCUgua-----CCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 29574 0.75 0.599965
Target:  5'- cCUGCUGCAgcGGCGCGuGCAgggcugccggGGCCACa -3'
miRNA:   3'- cGAUGAUGU--UCGCGC-UGUa---------CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 29642 0.67 0.944121
Target:  5'- cGCUGCcGCcGGuCGgGGacgcCAUGGCCGCGc -3'
miRNA:   3'- -CGAUGaUGuUC-GCgCU----GUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 29690 0.71 0.79397
Target:  5'- cGCUGCcGCAcguGGCgGCcuGCGUGGCCAUGa -3'
miRNA:   3'- -CGAUGaUGU---UCG-CGc-UGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 30032 0.77 0.497324
Target:  5'- gGCUGCaGCGGGcCGCGGCcugccGGCCGCGg -3'
miRNA:   3'- -CGAUGaUGUUC-GCGCUGua---CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 30218 0.67 0.952869
Target:  5'- cGC-GCUGgcGGCGCGAacCGUGGCCcCGc -3'
miRNA:   3'- -CGaUGAUguUCGCGCU--GUACCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 30323 0.69 0.878069
Target:  5'- gGCggaAgUGCcGGCGCGGCuggcGGCCGCGc -3'
miRNA:   3'- -CGa--UgAUGuUCGCGCUGua--CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 31194 0.68 0.933862
Target:  5'- cCUACUGCcgccccgAGGuCGCGGCGcGGCuCGCGg -3'
miRNA:   3'- cGAUGAUG-------UUC-GCGCUGUaCCG-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.