miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 134089 0.76 0.175341
Target:  5'- uGCGAGCucUCGGCGcg-CCGGCGCGCGc -3'
miRNA:   3'- cCGCUUG--AGCCGCcagGGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 127846 0.75 0.192829
Target:  5'- aGCGGACggGGCGGUCgCGGCGCcagggcacgaGCGg -3'
miRNA:   3'- cCGCUUGagCCGCCAGgGCCGCG----------CGC- -5'
23768 5' -62.8 NC_005261.1 + 65396 0.75 0.202134
Target:  5'- cGGCGggUUgGGCGGcCCCGGCaGCuccacguccGCGg -3'
miRNA:   3'- -CCGCuuGAgCCGCCaGGGCCG-CG---------CGC- -5'
23768 5' -62.8 NC_005261.1 + 90383 0.75 0.202134
Target:  5'- cGGCGAggccccGC-CGGCGGggcuggcgCCCGGCGCGg- -3'
miRNA:   3'- -CCGCU------UGaGCCGCCa-------GGGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 97408 0.75 0.202134
Target:  5'- cGCGGGCUUGGCGGgcgcgCCgGGCcugcccuuggGCGCGg -3'
miRNA:   3'- cCGCUUGAGCCGCCa----GGgCCG----------CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 95014 0.75 0.206447
Target:  5'- gGGCGGGCUauaaagccgccgcCGGCGGcgCUCGGCGcCGCa -3'
miRNA:   3'- -CCGCUUGA-------------GCCGCCa-GGGCCGC-GCGc -5'
23768 5' -62.8 NC_005261.1 + 104262 0.75 0.206931
Target:  5'- cGCGAGCgccGCGGUCUCGGCggcuGCGCGg -3'
miRNA:   3'- cCGCUUGagcCGCCAGGGCCG----CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 83555 0.75 0.206931
Target:  5'- cGCGAagaACUCGGCGGgcgugCCCgcGGCGCccGCGg -3'
miRNA:   3'- cCGCU---UGAGCCGCCa----GGG--CCGCG--CGC- -5'
23768 5' -62.8 NC_005261.1 + 52196 0.75 0.206931
Target:  5'- uGGCGAGCcccgCGGCGGcucaguacaccUCgCGGCGCuGCGg -3'
miRNA:   3'- -CCGCUUGa---GCCGCC-----------AGgGCCGCG-CGC- -5'
23768 5' -62.8 NC_005261.1 + 108733 0.75 0.211826
Target:  5'- cGCGGGCcagCGGCGGcgccgcggcgUCCgCGGCGCGCc -3'
miRNA:   3'- cCGCUUGa--GCCGCC----------AGG-GCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 23945 0.74 0.216821
Target:  5'- cGGCGggUUCGG-GGUCgUCGGCaCGCGg -3'
miRNA:   3'- -CCGCuuGAGCCgCCAG-GGCCGcGCGC- -5'
23768 5' -62.8 NC_005261.1 + 98370 0.74 0.221916
Target:  5'- cGCGGGCUCuGGCGGgcgcaauaCCGGCGUGgGg -3'
miRNA:   3'- cCGCUUGAG-CCGCCag------GGCCGCGCgC- -5'
23768 5' -62.8 NC_005261.1 + 75647 0.74 0.227113
Target:  5'- cGCGcGGC-CGGCGcGuUCCUGGCGCGCGc -3'
miRNA:   3'- cCGC-UUGaGCCGC-C-AGGGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 68063 0.74 0.227113
Target:  5'- cGCGGGCaCGGUGGUCUCGGuCGCccGCGg -3'
miRNA:   3'- cCGCUUGaGCCGCCAGGGCC-GCG--CGC- -5'
23768 5' -62.8 NC_005261.1 + 97534 0.74 0.227113
Target:  5'- cGCGA--UCGGCGGcCCCGGCgGUGCc -3'
miRNA:   3'- cCGCUugAGCCGCCaGGGCCG-CGCGc -5'
23768 5' -62.8 NC_005261.1 + 102879 0.74 0.232412
Target:  5'- aGGCGAACUCgGGCGGgagCCC--CGCGCc -3'
miRNA:   3'- -CCGCUUGAG-CCGCCa--GGGccGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 90889 0.74 0.23727
Target:  5'- gGGCGAcggcaugGCgCGGCaGGUCUCGGCgGCGCu -3'
miRNA:   3'- -CCGCU-------UGaGCCG-CCAGGGCCG-CGCGc -5'
23768 5' -62.8 NC_005261.1 + 92785 0.74 0.237815
Target:  5'- -cCGGGCUCGGggucggggucCGGUCgCCgGGCGCGCGg -3'
miRNA:   3'- ccGCUUGAGCC----------GCCAG-GG-CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 128443 0.74 0.24166
Target:  5'- uGGCGAACagcgCGGCGGUCgCGaGCacgacgagcagcgaGCGCGa -3'
miRNA:   3'- -CCGCUUGa---GCCGCCAGgGC-CG--------------CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 97755 0.74 0.243323
Target:  5'- gGGCGGGCUCGGCGG-CgCGGC-CgGCa -3'
miRNA:   3'- -CCGCUUGAGCCGCCaGgGCCGcG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.