miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 3515 0.71 0.353658
Target:  5'- cGCGGccgccuccaGCgCGGCGGccgCCuCGGCGCGCa -3'
miRNA:   3'- cCGCU---------UGaGCCGCCa--GG-GCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 3556 0.71 0.361148
Target:  5'- cGGCGGGCgCGGCGccgCUaaGGCGCGCGc -3'
miRNA:   3'- -CCGCUUGaGCCGCca-GGg-CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 3874 0.73 0.248937
Target:  5'- cGGCGAGCaCGGCGcGcagCUCGGCgaGCGCGg -3'
miRNA:   3'- -CCGCUUGaGCCGC-Ca--GGGCCG--CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 4186 0.68 0.489521
Target:  5'- cGCGAGCUUcgcgcucugcagccaGGCcauggcGUCgCGGCGCGCGu -3'
miRNA:   3'- cCGCUUGAG---------------CCGc-----CAGgGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 4451 0.72 0.291259
Target:  5'- aGCGGGCccuccagCGGCGGcggCCCGuCGCGCGg -3'
miRNA:   3'- cCGCUUGa------GCCGCCa--GGGCcGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 4575 0.73 0.254657
Target:  5'- gGGCGggUcCGGCGGggcgcccCCCGGCGC-Ca -3'
miRNA:   3'- -CCGCuuGaGCCGCCa------GGGCCGCGcGc -5'
23768 5' -62.8 NC_005261.1 + 5129 0.68 0.522567
Target:  5'- gGGCGGcccgccggcGCUCGcGCGccucggCCCGGCGgGCc -3'
miRNA:   3'- -CCGCU---------UGAGC-CGCca----GGGCCGCgCGc -5'
23768 5' -62.8 NC_005261.1 + 5523 0.66 0.61798
Target:  5'- cGGCGAgGC-CGcCGGcUUCGGCGCGCa -3'
miRNA:   3'- -CCGCU-UGaGCcGCCaGGGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 6198 0.71 0.358889
Target:  5'- gGGCGGgcccaGCUggcccgcccagaccUGGCGGUCCaGGUGCGCc -3'
miRNA:   3'- -CCGCU-----UGA--------------GCCGCCAGGgCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 6424 0.67 0.579369
Target:  5'- cGGCcuGCUCgcgagGGCGGUCCgGGgGC-CGg -3'
miRNA:   3'- -CCGcuUGAG-----CCGCCAGGgCCgCGcGC- -5'
23768 5' -62.8 NC_005261.1 + 7881 0.68 0.522567
Target:  5'- gGGC-AGCgagCGGCucuGUUCCGGCGCgGCGc -3'
miRNA:   3'- -CCGcUUGa--GCCGc--CAGGGCCGCG-CGC- -5'
23768 5' -62.8 NC_005261.1 + 10532 0.7 0.376455
Target:  5'- cGGCGcGCUCGcuguCGccCCCGGCGCGCc -3'
miRNA:   3'- -CCGCuUGAGCc---GCcaGGGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 11045 0.67 0.541295
Target:  5'- cGGCGGcACUCgGGCGccgCCCaGGCGcCGCc -3'
miRNA:   3'- -CCGCU-UGAG-CCGCca-GGG-CCGC-GCGc -5'
23768 5' -62.8 NC_005261.1 + 11828 0.67 0.541295
Target:  5'- aGUGGGggCGGgGGcCCCgcgGGCGCGCGu -3'
miRNA:   3'- cCGCUUgaGCCgCCaGGG---CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 11936 0.84 0.049027
Target:  5'- cGGCGGcccGCgccgCGGCGGcucgCCCGGCGCGCGc -3'
miRNA:   3'- -CCGCU---UGa---GCCGCCa---GGGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 12304 0.66 0.637369
Target:  5'- cGCGGGCacgGGCGcGUagCCGGCGgGCGc -3'
miRNA:   3'- cCGCUUGag-CCGC-CAg-GGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 12343 0.7 0.416592
Target:  5'- cGGCGcGGCcgccgccgCGGCGGcaaCCGGCGCGUc -3'
miRNA:   3'- -CCGC-UUGa-------GCCGCCag-GGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 12748 0.67 0.588985
Target:  5'- gGGCGGGCcCGGCgaGGUCguaGGCG-GCGg -3'
miRNA:   3'- -CCGCUUGaGCCG--CCAGgg-CCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 13099 0.76 0.16199
Target:  5'- cGGCGGGCucggcucgggggcgUCGGCGG-CCgCGGgGCGCGu -3'
miRNA:   3'- -CCGCUUG--------------AGCCGCCaGG-GCCgCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 13367 0.66 0.650935
Target:  5'- gGGCGGcaccGCUCGuacagccggcuguacGCGGUCUCggagcgguagGGCGaCGCGa -3'
miRNA:   3'- -CCGCU----UGAGC---------------CGCCAGGG----------CCGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.