miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 161 0.7 0.376455
Target:  5'- uGGCGGAgUUGGCGGggCUGGCGCc-- -3'
miRNA:   3'- -CCGCUUgAGCCGCCagGGCCGCGcgc -5'
23768 5' -62.8 NC_005261.1 + 231 0.69 0.433362
Target:  5'- cGCGGGCcccgCGaGCGGgCCCGGCuGCgGCGg -3'
miRNA:   3'- cCGCUUGa---GC-CGCCaGGGCCG-CG-CGC- -5'
23768 5' -62.8 NC_005261.1 + 273 0.68 0.504094
Target:  5'- cGGCGGcuGCggCGGCGGcUgCGGCG-GCGg -3'
miRNA:   3'- -CCGCU--UGa-GCCGCCaGgGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 330 0.77 0.151756
Target:  5'- cGGCGGcgGCUgCGGCGGcccgcagCCCGGCGCGg- -3'
miRNA:   3'- -CCGCU--UGA-GCCGCCa------GGGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 370 0.7 0.416592
Target:  5'- cGGCGGuggCGGCGGUggCGGCG-GCGg -3'
miRNA:   3'- -CCGCUugaGCCGCCAggGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 397 0.68 0.513296
Target:  5'- cGGCGGcgGCggCaGCGGUCCUGGuCcCGCGa -3'
miRNA:   3'- -CCGCU--UGa-GcCGCCAGGGCC-GcGCGC- -5'
23768 5' -62.8 NC_005261.1 + 463 0.67 0.560243
Target:  5'- cGCGAcgGC-CGGCGGga-UGGCGCGgGg -3'
miRNA:   3'- cCGCU--UGaGCCGCCaggGCCGCGCgC- -5'
23768 5' -62.8 NC_005261.1 + 545 0.72 0.304344
Target:  5'- gGGCGGA--CGGCGG-CUCGGCcgccGCGCGg -3'
miRNA:   3'- -CCGCUUgaGCCGCCaGGGCCG----CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 1045 0.69 0.424927
Target:  5'- cGGCGGGCggCGGCGuUagCGGCGCGgGg -3'
miRNA:   3'- -CCGCUUGa-GCCGCcAggGCCGCGCgC- -5'
23768 5' -62.8 NC_005261.1 + 1282 0.66 0.627673
Target:  5'- cGGCGcccaGGC-CGGCGGggcucccgUCgCCGGCG-GCGg -3'
miRNA:   3'- -CCGC----UUGaGCCGCC--------AG-GGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 1425 0.72 0.282993
Target:  5'- gGGCGGcgcccgccuccagcACcagCGGCGGcgCCuCGGCGUGCGg -3'
miRNA:   3'- -CCGCU--------------UGa--GCCGCCa-GG-GCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 1723 0.67 0.579369
Target:  5'- cGGCGGcacgggcaccGCggUGcGCGGgCCCaGGCGCGUGg -3'
miRNA:   3'- -CCGCU----------UGa-GC-CGCCaGGG-CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 1790 0.69 0.441893
Target:  5'- cGGCaGAGCcgcagCGGCGGcgcCCCGGgguagagcCGCGCGu -3'
miRNA:   3'- -CCG-CUUGa----GCCGCCa--GGGCC--------GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 1926 0.68 0.522567
Target:  5'- cGGCGcACUgCGccGCGGgcagcaCCgCGGCGCGCa -3'
miRNA:   3'- -CCGCuUGA-GC--CGCCa-----GG-GCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 2399 0.69 0.468042
Target:  5'- cGGCGAGCgCGcccGCGGgCCCcGCGCgGCGg -3'
miRNA:   3'- -CCGCUUGaGC---CGCCaGGGcCGCG-CGC- -5'
23768 5' -62.8 NC_005261.1 + 2651 0.79 0.110272
Target:  5'- gGGCGGGCagCGGCGGcUCCCGcCGCGCu -3'
miRNA:   3'- -CCGCUUGa-GCCGCC-AGGGCcGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 2751 0.66 0.637369
Target:  5'- cGGCGGGCcgucgCGGCGGgCCUcgaGGCcCGCc -3'
miRNA:   3'- -CCGCUUGa----GCCGCCaGGG---CCGcGCGc -5'
23768 5' -62.8 NC_005261.1 + 2983 0.73 0.260484
Target:  5'- aGGCugGGGCUCGGCcuGGcggCCCGGCGC-CGg -3'
miRNA:   3'- -CCG--CUUGAGCCG--CCa--GGGCCGCGcGC- -5'
23768 5' -62.8 NC_005261.1 + 3342 0.67 0.541295
Target:  5'- cGCGccg-CGGCG--CCCGGCGCGCc -3'
miRNA:   3'- cCGCuugaGCCGCcaGGGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 3413 0.69 0.449652
Target:  5'- cGGCGGGCUgaagagCGcGCGGgccagcgUCCaggcgGGCGCGCGg -3'
miRNA:   3'- -CCGCUUGA------GC-CGCC-------AGGg----CCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.