miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 51449 0.66 0.650935
Target:  5'- cGUGAugaucaaccugGC-CGGCGGUCugcuggcgcugaucaCCGGCGcCGCGc -3'
miRNA:   3'- cCGCU-----------UGaGCCGCCAG---------------GGCCGC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 122633 0.77 0.151756
Target:  5'- cGGCGAGCgCGa-GG-CCCGGCGCGCGu -3'
miRNA:   3'- -CCGCUUGaGCcgCCaGGGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 138001 0.77 0.151756
Target:  5'- cGGCGGcgGCUgCGGCGGcccgcagCCCGGCGCGg- -3'
miRNA:   3'- -CCGCU--UGA-GCCGCCa------GGGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 37226 0.76 0.159279
Target:  5'- cGCGGGCUUGcGCGG-CgCGGCGCGUGg -3'
miRNA:   3'- cCGCUUGAGC-CGCCaGgGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 13099 0.76 0.16199
Target:  5'- cGGCGGGCucggcucgggggcgUCGGCGG-CCgCGGgGCGCGu -3'
miRNA:   3'- -CCGCUUG--------------AGCCGCCaGG-GCCgCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 38939 0.76 0.163165
Target:  5'- cGGCGGcCg-GGCGGgCCgCGGCGCGCGg -3'
miRNA:   3'- -CCGCUuGagCCGCCaGG-GCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 44205 0.76 0.163165
Target:  5'- cGCGAGCUgcaGGCGG-CCCGggaGCGCGCGc -3'
miRNA:   3'- cCGCUUGAg--CCGCCaGGGC---CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 32384 0.76 0.167137
Target:  5'- aGGCGcGGCgCGGCGGcgUCCCGGaGCGCGu -3'
miRNA:   3'- -CCGC-UUGaGCCGCC--AGGGCCgCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 106095 0.76 0.171195
Target:  5'- cGGCGAucgcgACgUCGGCcggcGUCgCCGGCGCGCGc -3'
miRNA:   3'- -CCGCU-----UG-AGCCGc---CAG-GGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 74112 0.77 0.151756
Target:  5'- gGGCccGGACcCGGUGGUCCUGGCGC-CGg -3'
miRNA:   3'- -CCG--CUUGaGCCGCCAGGGCCGCGcGC- -5'
23768 5' -62.8 NC_005261.1 + 330 0.77 0.151756
Target:  5'- cGGCGGcgGCUgCGGCGGcccgcagCCCGGCGCGg- -3'
miRNA:   3'- -CCGCU--UGA-GCCGCCa------GGGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 105274 0.77 0.144557
Target:  5'- cGGCGGGCggcagcgcCGGCGaGcCCgGGCGCGCGa -3'
miRNA:   3'- -CCGCUUGa-------GCCGC-CaGGgCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 93733 0.84 0.049534
Target:  5'- cGGCGGcagcgcgcgcuucguACUCGGCGG-CCCGcGCGCGCGc -3'
miRNA:   3'- -CCGCU---------------UGAGCCGCCaGGGC-CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 94026 0.81 0.07567
Target:  5'- aGCGcaccuuCUCGGCGG-CCCGGCGCGCc -3'
miRNA:   3'- cCGCuu----GAGCCGCCaGGGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 135083 0.8 0.094936
Target:  5'- cGGCGGGCUC-GCGG-CCCGGCG-GCGg -3'
miRNA:   3'- -CCGCUUGAGcCGCCaGGGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 74892 0.79 0.09981
Target:  5'- cGGCGGAgUCGGCGG-CCCGcGCuggccGCGCGg -3'
miRNA:   3'- -CCGCUUgAGCCGCCaGGGC-CG-----CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 76444 0.79 0.105969
Target:  5'- uGGCGGACgcgcccgacggcgaCGGCGG-CgCCGGCGCGCGc -3'
miRNA:   3'- -CCGCUUGa-------------GCCGCCaG-GGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 2651 0.79 0.110272
Target:  5'- gGGCGGGCagCGGCGGcUCCCGcCGCGCu -3'
miRNA:   3'- -CCGCUUGa-GCCGCC-AGGGCcGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 73593 0.78 0.118785
Target:  5'- cGGCGGAggCGGCGG-CCgCGaGCGCGCGg -3'
miRNA:   3'- -CCGCUUgaGCCGCCaGG-GC-CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 67077 0.77 0.144557
Target:  5'- gGGCucGCUCgGGCGGUCCaUGGCGCGaCGc -3'
miRNA:   3'- -CCGcuUGAG-CCGCCAGG-GCCGCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.