miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 50785 0.66 0.598631
Target:  5'- cGCGg---CGGCGGccgcCCCGGCGcCGCc -3'
miRNA:   3'- cCGCuugaGCCGCCa---GGGCCGC-GCGc -5'
23768 5' -62.8 NC_005261.1 + 80649 0.66 0.598631
Target:  5'- cGGCGAguaGCU-GGUGuGcUCgCGGUGCGCGc -3'
miRNA:   3'- -CCGCU---UGAgCCGC-C-AGgGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 51449 0.66 0.650935
Target:  5'- cGUGAugaucaaccugGC-CGGCGGUCugcuggcgcugaucaCCGGCGcCGCGc -3'
miRNA:   3'- cCGCU-----------UGaGCCGCCAG---------------GGCCGC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 69453 0.66 0.598631
Target:  5'- cGGaCGAGCUgCGGCGcGUCgaGGgccacaucCGCGCGa -3'
miRNA:   3'- -CC-GCUUGA-GCCGC-CAGggCC--------GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 37462 0.66 0.608298
Target:  5'- aGGCGGguGCUCGcCGGcacCCCGGCGUa-- -3'
miRNA:   3'- -CCGCU--UGAGCcGCCa--GGGCCGCGcgc -5'
23768 5' -62.8 NC_005261.1 + 100838 0.66 0.598631
Target:  5'- aGGCcggGAGCUCGGCGa--CCuGCGCGuCGa -3'
miRNA:   3'- -CCG---CUUGAGCCGCcagGGcCGCGC-GC- -5'
23768 5' -62.8 NC_005261.1 + 67116 0.66 0.61798
Target:  5'- cGGCGcGCgcagugCGGCGG-CCCGaccGCgGCGCc -3'
miRNA:   3'- -CCGCuUGa-----GCCGCCaGGGC---CG-CGCGc -5'
23768 5' -62.8 NC_005261.1 + 133223 0.66 0.61798
Target:  5'- aGGcCGAGCUggggcccuacaUGGCGGagcacuaCCCgcaggcGGCGCGCGa -3'
miRNA:   3'- -CC-GCUUGA-----------GCCGCCa------GGG------CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 47308 0.66 0.598631
Target:  5'- -aCGAGCaUGGCGG-CCaccggggagaaGGCGCGCGc -3'
miRNA:   3'- ccGCUUGaGCCGCCaGGg----------CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 59861 0.66 0.598631
Target:  5'- cGCgGGACgUCGGCcucguacgGGUgCCGGCGgGCa -3'
miRNA:   3'- cCG-CUUG-AGCCG--------CCAgGGCCGCgCGc -5'
23768 5' -62.8 NC_005261.1 + 59050 0.66 0.608298
Target:  5'- cGCGAGCUCagcgcgcGCGG-CCgCGGagaGCGCGc -3'
miRNA:   3'- cCGCUUGAGc------CGCCaGG-GCCg--CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 53973 0.66 0.598631
Target:  5'- uGGCaaaaGAGCgCGGCGaGcUCCaGCGCGCGg -3'
miRNA:   3'- -CCG----CUUGaGCCGC-CaGGGcCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 94823 0.66 0.61798
Target:  5'- aGGUGAACUaccUGGCcuUCaCGGCGCGCc -3'
miRNA:   3'- -CCGCUUGA---GCCGccAGgGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 37409 0.66 0.608298
Target:  5'- gGGCGuACUgGGCcaaCCCcuacgccguGGCGCGCGg -3'
miRNA:   3'- -CCGCuUGAgCCGccaGGG---------CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 15724 0.66 0.61798
Target:  5'- cGGCGAACgCGaCGGggCCGuccGCGCGCa -3'
miRNA:   3'- -CCGCUUGaGCcGCCagGGC---CGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 57183 0.66 0.615074
Target:  5'- aGUGGGgUCGGCGGgaaggggggggggGGCGCGCGg -3'
miRNA:   3'- cCGCUUgAGCCGCCaggg---------CCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 71186 0.66 0.61798
Target:  5'- gGGCGcAGCUC-GCGGggCgCGGCcagcuGCGCGa -3'
miRNA:   3'- -CCGC-UUGAGcCGCCa-GgGCCG-----CGCGC- -5'
23768 5' -62.8 NC_005261.1 + 33053 0.66 0.598631
Target:  5'- gGGCcaGGACUCGGCgccGGggaCgCGGCGCugGCGg -3'
miRNA:   3'- -CCG--CUUGAGCCG---CCa--GgGCCGCG--CGC- -5'
23768 5' -62.8 NC_005261.1 + 135292 0.66 0.608298
Target:  5'- cGGCGggUUCcGCGcgaCCGGCGUGUc -3'
miRNA:   3'- -CCGCuuGAGcCGCcagGGCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 49177 0.66 0.598631
Target:  5'- cGGCGGgguGCUCGGCcaGGcCCuCGGcCGacaGCGa -3'
miRNA:   3'- -CCGCU---UGAGCCG--CCaGG-GCC-GCg--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.