miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 60840 0.66 0.863182
Target:  5'- aUCggcggCGGCGAgGUCGCGcgccGGGCcgagCCCGc -3'
miRNA:   3'- -AGa----GCUGCUgCAGCGC----CCUGua--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 94407 0.66 0.863182
Target:  5'- cCUCGacgaagggcGCGACGUcCGCGGcGCcgCCCc -3'
miRNA:   3'- aGAGC---------UGCUGCA-GCGCCcUGuaGGGc -5'
23773 3' -57.5 NC_005261.1 + 63006 0.66 0.863182
Target:  5'- cCUCGGCGGCcgcgcccgCGCGGGcgccgGCG-CCCGc -3'
miRNA:   3'- aGAGCUGCUGca------GCGCCC-----UGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 103501 0.66 0.848013
Target:  5'- -gUCGuCGGCGcCGCGGacggcGGCGUCCgCGg -3'
miRNA:   3'- agAGCuGCUGCaGCGCC-----CUGUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 2486 0.66 0.877557
Target:  5'- gCUCGGgGAaga-GCGGGugGUCCgCGa -3'
miRNA:   3'- aGAGCUgCUgcagCGCCCugUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 56186 0.66 0.848013
Target:  5'- ---gGACGACG-CGCGGG-C-UCCCu -3'
miRNA:   3'- agagCUGCUGCaGCGCCCuGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 15879 0.67 0.832098
Target:  5'- gCUCGAgucgcCGACG-CGCGGGcGCuuuaucUCCCGc -3'
miRNA:   3'- aGAGCU-----GCUGCaGCGCCC-UGu-----AGGGC- -5'
23773 3' -57.5 NC_005261.1 + 1412 0.67 0.840146
Target:  5'- --gCGGCGGCGgCG-GGGGCGgcgCCCGc -3'
miRNA:   3'- agaGCUGCUGCaGCgCCCUGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 17047 0.67 0.823877
Target:  5'- cCUCGACGGgcUGcUCGCGGc-CGUCCUGg -3'
miRNA:   3'- aGAGCUGCU--GC-AGCGCCcuGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 107368 0.67 0.832098
Target:  5'- -gUCGugGGCG-C-CGGGGCG-CCCGc -3'
miRNA:   3'- agAGCugCUGCaGcGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 13854 0.67 0.823877
Target:  5'- cCUCGucgcCGGCGUCGCcGG-CggCCCGg -3'
miRNA:   3'- aGAGCu---GCUGCAGCGcCCuGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 113592 0.67 0.81549
Target:  5'- gCUgGGCGACcUCGCGcccGGGCA-CCCGc -3'
miRNA:   3'- aGAgCUGCUGcAGCGC---CCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 110481 0.67 0.806945
Target:  5'- cUCUCGugGACcaCGCaGGACAagCUGg -3'
miRNA:   3'- -AGAGCugCUGcaGCGcCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 32497 0.67 0.840146
Target:  5'- --gCGACGGCGgcaUCgGCGGGGgGUCCgCGc -3'
miRNA:   3'- agaGCUGCUGC---AG-CGCCCUgUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 56576 0.67 0.806945
Target:  5'- cCUCGGCGGCGacgacgGCGcGGACccCCCGc -3'
miRNA:   3'- aGAGCUGCUGCag----CGC-CCUGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 131925 0.67 0.823877
Target:  5'- uUUUUGGCG-CG-CGCGGGACcgcggugCCCGc -3'
miRNA:   3'- -AGAGCUGCuGCaGCGCCCUGua-----GGGC- -5'
23773 3' -57.5 NC_005261.1 + 47157 0.68 0.76766
Target:  5'- -gUCGGCGGCcgagaccaccaGCGGGACG-CCCGg -3'
miRNA:   3'- agAGCUGCUGcag--------CGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 109759 0.68 0.762114
Target:  5'- cUCcCGGCcgccGCGUCGCcgucucGGGCGUCCCGg -3'
miRNA:   3'- -AGaGCUGc---UGCAGCGc-----CCUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 93563 0.68 0.762114
Target:  5'- -gUCGACGGCGgugCgGCGGGACGcgaUCgCGc -3'
miRNA:   3'- agAGCUGCUGCa--G-CGCCCUGU---AGgGC- -5'
23773 3' -57.5 NC_005261.1 + 49120 0.68 0.762114
Target:  5'- cCUCGagcGCGGCGg-GCGGGACc-CCCGc -3'
miRNA:   3'- aGAGC---UGCUGCagCGCCCUGuaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.