Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23773 | 3' | -57.5 | NC_005261.1 | + | 55174 | 0.66 | 0.870471 |
Target: 5'- --cCGGCGGC-UCGCGGGGCGgaUCGg -3' miRNA: 3'- agaGCUGCUGcAGCGCCCUGUagGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 60840 | 0.66 | 0.863182 |
Target: 5'- aUCggcggCGGCGAgGUCGCGcgccGGGCcgagCCCGc -3' miRNA: 3'- -AGa----GCUGCUgCAGCGC----CCUGua--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 33601 | 0.66 | 0.863182 |
Target: 5'- ---gGGCGGCGccggCGCGGGcgGCGgggCCCGg -3' miRNA: 3'- agagCUGCUGCa---GCGCCC--UGUa--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 38414 | 0.66 | 0.870471 |
Target: 5'- cCUCGcCGcUGUCGCGGG-CG-CCCu -3' miRNA: 3'- aGAGCuGCuGCAGCGCCCuGUaGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 132118 | 0.66 | 0.870471 |
Target: 5'- gCUCGugGAgCGggacgCGCGGcuGACcgCCCu -3' miRNA: 3'- aGAGCugCU-GCa----GCGCC--CUGuaGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 128504 | 0.66 | 0.870471 |
Target: 5'- gCUCGACG-CGgcgGCGGaGGCAgccUCCUGg -3' miRNA: 3'- aGAGCUGCuGCag-CGCC-CUGU---AGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 14440 | 0.66 | 0.855694 |
Target: 5'- aCUCGGCu-CGcUCGCGGGGCG-CgCGg -3' miRNA: 3'- aGAGCUGcuGC-AGCGCCCUGUaGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 56186 | 0.66 | 0.848013 |
Target: 5'- ---gGACGACG-CGCGGG-C-UCCCu -3' miRNA: 3'- agagCUGCUGCaGCGCCCuGuAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 127743 | 0.66 | 0.86392 |
Target: 5'- gCUUGGCGGCGggaGCGGGccGCGgcgggcgcgaagacgCCCGg -3' miRNA: 3'- aGAGCUGCUGCag-CGCCC--UGUa--------------GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 103501 | 0.66 | 0.848013 |
Target: 5'- -gUCGuCGGCGcCGCGGacggcGGCGUCCgCGg -3' miRNA: 3'- agAGCuGCUGCaGCGCC-----CUGUAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 127051 | 0.66 | 0.855694 |
Target: 5'- cCUCGAUGGCGUCGUacGGGuCcaugGUgCCGc -3' miRNA: 3'- aGAGCUGCUGCAGCG--CCCuG----UAgGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 90886 | 0.66 | 0.870471 |
Target: 5'- gCUgGGCGACGgcauggCGCGGcAgGUCUCGg -3' miRNA: 3'- aGAgCUGCUGCa-----GCGCCcUgUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 84952 | 0.66 | 0.870471 |
Target: 5'- cCUCGGCGGCcgccgaggCGuCGGGcGCGUCCgCGa -3' miRNA: 3'- aGAGCUGCUGca------GC-GCCC-UGUAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 50908 | 0.66 | 0.86758 |
Target: 5'- cCUUGAuCGGCGccgccucgccgggCGCGGGGC-UCCCc -3' miRNA: 3'- aGAGCU-GCUGCa------------GCGCCCUGuAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 2486 | 0.66 | 0.877557 |
Target: 5'- gCUCGGgGAaga-GCGGGugGUCCgCGa -3' miRNA: 3'- aGAGCUgCUgcagCGCCCugUAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 94407 | 0.66 | 0.863182 |
Target: 5'- cCUCGacgaagggcGCGACGUcCGCGGcGCcgCCCc -3' miRNA: 3'- aGAGC---------UGCUGCA-GCGCCcUGuaGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 136440 | 0.66 | 0.870471 |
Target: 5'- cCUCG-CgGGCGUCGCaGGGGCAcgcggcagCCCc -3' miRNA: 3'- aGAGCuG-CUGCAGCG-CCCUGUa-------GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 125329 | 0.66 | 0.848013 |
Target: 5'- cCUCGGCGuccgcaGCG-CGCaGGGCGUCCa- -3' miRNA: 3'- aGAGCUGC------UGCaGCGcCCUGUAGGgc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 88857 | 0.66 | 0.855694 |
Target: 5'- cCUgGGCcGCGccUCGCGGGACAgccUCuCCGu -3' miRNA: 3'- aGAgCUGcUGC--AGCGCCCUGU---AG-GGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 63006 | 0.66 | 0.863182 |
Target: 5'- cCUCGGCGGCcgcgcccgCGCGGGcgccgGCG-CCCGc -3' miRNA: 3'- aGAGCUGCUGca------GCGCCC-----UGUaGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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