miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 123272 0.66 0.884435
Target:  5'- --gUGACGAgGU-GCGGGugGUCCg- -3'
miRNA:   3'- agaGCUGCUgCAgCGCCCugUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 42201 0.7 0.635371
Target:  5'- gCUCcACGGCGcCGCGcGGGCGcCCCGc -3'
miRNA:   3'- aGAGcUGCUGCaGCGC-CCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 123458 0.7 0.635371
Target:  5'- --aUGACGcCGUCGCGGG-CcUCCCa -3'
miRNA:   3'- agaGCUGCuGCAGCGCCCuGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 130256 0.7 0.655334
Target:  5'- --gCGGCu-CGUacUGCGGGGCGUCCCGc -3'
miRNA:   3'- agaGCUGcuGCA--GCGCCCUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 3892 0.7 0.665293
Target:  5'- gCUCGGCGAgCGcggCGCGGG-CG-CCCGc -3'
miRNA:   3'- aGAGCUGCU-GCa--GCGCCCuGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 45005 0.7 0.665293
Target:  5'- gCUCGAUGACcUCGUGuGGAacgcgGUCCCGc -3'
miRNA:   3'- aGAGCUGCUGcAGCGC-CCUg----UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 32384 0.7 0.675226
Target:  5'- ---aGGCG-CGgCGCGGcGGCGUCCCGg -3'
miRNA:   3'- agagCUGCuGCaGCGCC-CUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 24390 0.7 0.675226
Target:  5'- gCUCGuCGGCG--GCGGGGCgGUCCUGg -3'
miRNA:   3'- aGAGCuGCUGCagCGCCCUG-UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 69178 0.7 0.685126
Target:  5'- cCUUGACGAgggcacCGUCGCGGacgcggccaacGACGUCCUc -3'
miRNA:   3'- aGAGCUGCU------GCAGCGCC-----------CUGUAGGGc -5'
23773 3' -57.5 NC_005261.1 + 71409 0.71 0.625382
Target:  5'- ---aGGCGGCGUccggCGCGGGGCccggCCCGg -3'
miRNA:   3'- agagCUGCUGCA----GCGCCCUGua--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 46488 0.71 0.605426
Target:  5'- gCUCGGCGcCcucCGCGGGGCGcagCCCGg -3'
miRNA:   3'- aGAGCUGCuGca-GCGCCCUGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 25038 0.71 0.60443
Target:  5'- uUCUC-ACGugGUCGCGGGccccaaaaaccugGCAcgguUCCCa -3'
miRNA:   3'- -AGAGcUGCugCAGCGCCC-------------UGU----AGGGc -5'
23773 3' -57.5 NC_005261.1 + 104818 0.75 0.392252
Target:  5'- gCUCcgcaGCGGCGUCGCGGGGCcgCgCCa -3'
miRNA:   3'- aGAGc---UGCUGCAGCGCCCUGuaG-GGc -5'
23773 3' -57.5 NC_005261.1 + 106644 0.75 0.40891
Target:  5'- gCUCGGCGACGUCGCGcucgccggcgcGGuCGUCCa- -3'
miRNA:   3'- aGAGCUGCUGCAGCGC-----------CCuGUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 11014 0.73 0.479706
Target:  5'- cCUCGACGGCcucGUCGcCGGGccCGUCCCc -3'
miRNA:   3'- aGAGCUGCUG---CAGC-GCCCu-GUAGGGc -5'
23773 3' -57.5 NC_005261.1 + 39778 0.73 0.498336
Target:  5'- cCUCGAgGACGUCGCcggGGGGCggCgCGg -3'
miRNA:   3'- aGAGCUgCUGCAGCG---CCCUGuaGgGC- -5'
23773 3' -57.5 NC_005261.1 + 104275 0.73 0.507771
Target:  5'- gUCUCGGCGGCuG-CGCGGGccucGCAggCCCGc -3'
miRNA:   3'- -AGAGCUGCUG-CaGCGCCC----UGUa-GGGC- -5'
23773 3' -57.5 NC_005261.1 + 46385 0.72 0.565793
Target:  5'- cUCUCGGCGccggcccCGUCGCcgacGGuGGCGUCCCa -3'
miRNA:   3'- -AGAGCUGCu------GCAGCG----CC-CUGUAGGGc -5'
23773 3' -57.5 NC_005261.1 + 47534 0.72 0.573675
Target:  5'- aCUCGACGGCGUucccgggCGCGGcgaaguuGGCGUgCCCGu -3'
miRNA:   3'- aGAGCUGCUGCA-------GCGCC-------CUGUA-GGGC- -5'
23773 3' -57.5 NC_005261.1 + 110222 0.72 0.57565
Target:  5'- cCUCGGCGACGccuccagCGUGGGcggcGCGgcgCCCGg -3'
miRNA:   3'- aGAGCUGCUGCa------GCGCCC----UGUa--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.