miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 1412 0.67 0.840146
Target:  5'- --gCGGCGGCGgCG-GGGGCGgcgCCCGc -3'
miRNA:   3'- agaGCUGCUGCaGCgCCCUGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 2072 0.69 0.714542
Target:  5'- aCUCGACcGCGcCGCGGaaGGCcagGUCCCGc -3'
miRNA:   3'- aGAGCUGcUGCaGCGCC--CUG---UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 2486 0.66 0.877557
Target:  5'- gCUCGGgGAaga-GCGGGugGUCCgCGa -3'
miRNA:   3'- aGAGCUgCUgcagCGCCCugUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 2991 0.68 0.771334
Target:  5'- gCUCGGCcuGGCGgcccggCGcCGGGGC-UCCCGc -3'
miRNA:   3'- aGAGCUG--CUGCa-----GC-GCCCUGuAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 3892 0.7 0.665293
Target:  5'- gCUCGGCGAgCGcggCGCGGG-CG-CCCGc -3'
miRNA:   3'- aGAGCUGCU-GCa--GCGCCCuGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 11014 0.73 0.479706
Target:  5'- cCUCGACGGCcucGUCGcCGGGccCGUCCCc -3'
miRNA:   3'- aGAGCUGCUG---CAGC-GCCCu-GUAGGGc -5'
23773 3' -57.5 NC_005261.1 + 13854 0.67 0.823877
Target:  5'- cCUCGucgcCGGCGUCGCcGG-CggCCCGg -3'
miRNA:   3'- aGAGCu---GCUGCAGCGcCCuGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 14440 0.66 0.855694
Target:  5'- aCUCGGCu-CGcUCGCGGGGCG-CgCGg -3'
miRNA:   3'- aGAGCUGcuGC-AGCGCCCUGUaGgGC- -5'
23773 3' -57.5 NC_005261.1 + 15063 0.69 0.691047
Target:  5'- gUCgCGGCGGgGUCGgGGGucaggcucgcccuCGUCCCGg -3'
miRNA:   3'- -AGaGCUGCUgCAGCgCCCu------------GUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 15879 0.67 0.832098
Target:  5'- gCUCGAgucgcCGACG-CGCGGGcGCuuuaucUCCCGc -3'
miRNA:   3'- aGAGCU-----GCUGCaGCGCCC-UGu-----AGGGC- -5'
23773 3' -57.5 NC_005261.1 + 16430 0.69 0.724224
Target:  5'- cCUCGACGGCGg-GCGGcGGCucguagCCCu -3'
miRNA:   3'- aGAGCUGCUGCagCGCC-CUGua----GGGc -5'
23773 3' -57.5 NC_005261.1 + 17047 0.67 0.823877
Target:  5'- cCUCGACGGgcUGcUCGCGGc-CGUCCUGg -3'
miRNA:   3'- aGAGCUGCU--GC-AGCGCCcuGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 18711 0.68 0.789409
Target:  5'- -gUCGGCGAagcagagaucguCGggCGCGGGGCGcCCCa -3'
miRNA:   3'- agAGCUGCU------------GCa-GCGCCCUGUaGGGc -5'
23773 3' -57.5 NC_005261.1 + 19020 0.68 0.789409
Target:  5'- ---gGugGucaGCGUCGCGGGGCAg-CCGg -3'
miRNA:   3'- agagCugC---UGCAGCGCCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 23476 0.68 0.780434
Target:  5'- --gCGGCGGCGagugCGCGGGcCcgCCUGg -3'
miRNA:   3'- agaGCUGCUGCa---GCGCCCuGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 24390 0.7 0.675226
Target:  5'- gCUCGuCGGCG--GCGGGGCgGUCCUGg -3'
miRNA:   3'- aGAGCuGCUGCagCGCCCUG-UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 25038 0.71 0.60443
Target:  5'- uUCUC-ACGugGUCGCGGGccccaaaaaccugGCAcgguUCCCa -3'
miRNA:   3'- -AGAGcUGCugCAGCGCCC-------------UGU----AGGGc -5'
23773 3' -57.5 NC_005261.1 + 27450 0.69 0.733831
Target:  5'- gUUUGGCGGCGggccgcccCGCGGGGCGggcaggCCCu -3'
miRNA:   3'- aGAGCUGCUGCa-------GCGCCCUGUa-----GGGc -5'
23773 3' -57.5 NC_005261.1 + 30256 0.68 0.780434
Target:  5'- aCUCGACGcGCGgCGCGGcGGCccgcgcgCCCGc -3'
miRNA:   3'- aGAGCUGC-UGCaGCGCC-CUGua-----GGGC- -5'
23773 3' -57.5 NC_005261.1 + 32384 0.7 0.675226
Target:  5'- ---aGGCG-CGgCGCGGcGGCGUCCCGg -3'
miRNA:   3'- agagCUGCuGCaGCGCC-CUGUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.